Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J09
(680 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 223 4e-57
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 220 2e-56
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 215 8e-55
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 185 8e-46
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 185 1e-45
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 180 3e-44
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 177 2e-43
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 177 2e-43
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 175 1e-42
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 170 3e-41
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 167 2e-40
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 167 2e-40
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 165 7e-40
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 164 2e-39
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 159 6e-38
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 150 3e-35
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 149 5e-35
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 149 5e-35
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 146 3e-34
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 144 2e-33
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 141 2e-32
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 138 1e-31
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 137 2e-31
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 134 2e-30
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 134 2e-30
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 134 2e-30
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 134 2e-30
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 130 2e-29
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 127 2e-28
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 127 3e-28
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 123 5e-27
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 121 2e-26
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 105 8e-22
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 105 1e-21
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 102 9e-21
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 91 3e-17
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 87 4e-16
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 85 1e-15
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 81 2e-14
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 81 3e-14
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 79 1e-13
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 78 2e-13
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 76 9e-13
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 74 3e-12
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 74 4e-12
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 73 6e-12
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 73 9e-12
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 72 2e-11
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 71 3e-11
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 70 5e-11
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 69 1e-10
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 69 1e-10
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 69 1e-10
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 68 2e-10
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 67 3e-10
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 66 7e-10
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 66 1e-09
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 65 1e-09
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 64 2e-09
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 64 3e-09
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 64 3e-09
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 62 1e-08
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 61 3e-08
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 60 4e-08
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 60 4e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 9e-08
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 58 2e-07
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 56 8e-07
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 56 1e-06
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 55 1e-06
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 54 2e-06
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 52 1e-05
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 52 1e-05
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 52 1e-05
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 51 2e-05
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 50 4e-05
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 50 7e-05
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 47 4e-04
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 46 6e-04
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 46 0.001
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 46 0.001
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 45 0.001
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 45 0.001
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 45 0.002
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 44 0.003
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 44 0.003
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 44 0.005
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 43 0.008
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 43 0.008
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 42 0.011
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 41 0.024
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 40 0.042
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 38 0.17
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 38 0.23
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 38 0.30
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 37 0.40
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 36 0.91
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ... 33 8.5
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 223 bits (544), Expect = 4e-57
Identities = 120/210 (57%), Positives = 137/210 (65%)
Frame = -2
Query: 679 IGSPPPAGSXNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFNRXX 500
IGSPPPAGS +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I +R
Sbjct: 6 IGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVIPADRML 65
Query: 499 XXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINNI 320
I+E PAKC+EKI STD P CAI SGG TVHPVP P STI L + +
Sbjct: 66 ITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIPLNKSKV 125
Query: 319 REGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIVL*I*SX 140
+EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT+ L I S
Sbjct: 126 KEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMTL-IWSF 184
Query: 139 PINXPGLPNSARIKRLKDVPMMPXQRPKKK 50
PI PG PNSARIK L DVP MP PK K
Sbjct: 185 PIKLPGCPNSARIKSLSDVPTMPAHAPKMK 214
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 220 bits (538), Expect = 2e-56
Identities = 118/192 (61%), Positives = 124/192 (64%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAELG PGSLIG DQIYNTIVTAHA N LVPL+LGAPD+AFPR+
Sbjct: 35 RAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRM 94
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 95 NNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISS 154
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
SFDQ+PLFV AVGITAF AGAIT+LLTDRNLNT
Sbjct: 155 ILGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLSLPVLAGAITMLLTDRNLNT 214
Query: 645 SFXDPAGGGDPI 680
SF DPAGGGDPI
Sbjct: 215 SFFDPAGGGDPI 226
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 215 bits (525), Expect = 8e-55
Identities = 114/192 (59%), Positives = 122/192 (63%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R ELG PGSLIG DQIYNTIVTAHA N L+PL+LGAPD+AFPR+
Sbjct: 11 RTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRM 70
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 71 NNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISS 130
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
SFDQ+PLF+ AVGITA AGAIT+LLTDRNLNT
Sbjct: 131 ILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLTDRNLNT 190
Query: 645 SFXDPAGGGDPI 680
SF DPAGGGDPI
Sbjct: 191 SFFDPAGGGDPI 202
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 185 bits (451), Expect = 8e-46
Identities = 99/192 (51%), Positives = 111/192 (57%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R ELG PGS IG DQ+YN +VTAHA N LVPL+LGAPD+AFPR+
Sbjct: 21 RVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRL 80
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG+SS
Sbjct: 81 NNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSS 140
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ + LFV +V ITA AGAIT+LLTDRN NT
Sbjct: 141 ILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNT 200
Query: 645 SFXDPAGGGDPI 680
SF DPAGGGDPI
Sbjct: 201 SFFDPAGGGDPI 212
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 185 bits (450), Expect = 1e-45
Identities = 102/192 (53%), Positives = 114/192 (59%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAELG PG+L+G DQIYN IVTAHA N LVPL++GAPD+AFPR+
Sbjct: 39 RAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRM 98
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F VE GAGTG TVYPPL+ N+AH G SVDLAIFSLHLAGISS
Sbjct: 99 NNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGISS 158
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S Q PLFV +V ITA A IT+LLTDRNLNT
Sbjct: 159 ILGAINFITTAINMKPPAISQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNT 218
Query: 645 SFXDPAGGGDPI 680
+F DPAGGGDPI
Sbjct: 219 TFFDPAGGGDPI 230
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 180 bits (438), Expect = 3e-44
Identities = 98/192 (51%), Positives = 111/192 (57%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAEL PG+L+G DQIYN IVTAHA N LVPL++GAPD+AFPR+
Sbjct: 38 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRM 97
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS
Sbjct: 98 NNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSS 157
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S Q PLFV AV +TA A IT+LLTDRNLNT
Sbjct: 158 ILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLTDRNLNT 217
Query: 645 SFXDPAGGGDPI 680
+F DPAGGGDPI
Sbjct: 218 TFFDPAGGGDPI 229
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 177 bits (431), Expect = 2e-43
Identities = 96/192 (50%), Positives = 111/192 (57%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAEL PG+L+G DQIYN IVTAHA N LVPL++GAPD+AFPR+
Sbjct: 38 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRM 97
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS
Sbjct: 98 NNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSS 157
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ Q PLFV +V +TA A IT+LLTDRNLNT
Sbjct: 158 ILGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNT 217
Query: 645 SFXDPAGGGDPI 680
+F DPAGGGDPI
Sbjct: 218 TFFDPAGGGDPI 229
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 177 bits (431), Expect = 2e-43
Identities = 96/192 (50%), Positives = 111/192 (57%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAELG PG+L+G D IYN IVTAHA N LVPL++GAPD+AFPR+
Sbjct: 38 RAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRM 97
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F +VE GAGTG TVYPPL+ N +H G SVDL IFSLHLAG+SS
Sbjct: 98 NNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSS 157
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ Q PLFV +V ITA A IT+LLTDRNLNT
Sbjct: 158 ILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNT 217
Query: 645 SFXDPAGGGDPI 680
+F DPAGGGDPI
Sbjct: 218 TFFDPAGGGDPI 229
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 175 bits (425), Expect = 1e-42
Identities = 93/192 (48%), Positives = 111/192 (57%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL +PGS++G D +YN IVTAHA N VPL++GAPD+AFPR+
Sbjct: 39 RLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRL 98
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NNI F +VE GAGTG TVYPPL+S AH G SVD+AIFSLHLAG+SS
Sbjct: 99 NNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSS 158
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ ++PLFV +V ITA AGAIT+LLTDR NT
Sbjct: 159 ILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLLLSLPVLAGAITMLLTDRYFNT 218
Query: 645 SFXDPAGGGDPI 680
+F DPAGGGDPI
Sbjct: 219 TFFDPAGGGDPI 230
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 170 bits (413), Expect = 3e-41
Identities = 91/192 (47%), Positives = 109/192 (56%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R ELG PGSLIG DQIYN+IVT+HA N L+PL+LG+PD++FPR+
Sbjct: 22 RLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRM 81
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F + G GTG TVYPPLS + H G SVDL IFSLHLAG SS
Sbjct: 82 NNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASS 141
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ D++ LF +V ITA AGAIT+LLTDRN+NT
Sbjct: 142 IMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLTDRNMNT 201
Query: 645 SFXDPAGGGDPI 680
SF DP+GGGDPI
Sbjct: 202 SFFDPSGGGDPI 213
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 167 bits (407), Expect = 2e-40
Identities = 94/194 (48%), Positives = 108/194 (55%), Gaps = 2/194 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG L G Q+YN I+TAHA N LVP+++GAPD+AFP
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFP 95
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
R+NNI F VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GI
Sbjct: 96 RLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGI 155
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS + +LPLFV A+ +TA AGAIT+LLTDRN
Sbjct: 156 SSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRNF 215
Query: 639 NTSFXDPAGGGDPI 680
NTSF DPAGGGDPI
Sbjct: 216 NTSFYDPAGGGDPI 229
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 167 bits (407), Expect = 2e-40
Identities = 94/194 (48%), Positives = 108/194 (55%), Gaps = 2/194 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG L G Q+YN I+TAHA N LVP+++GAPD+AFP
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFP 95
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
R+NNI F VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GI
Sbjct: 96 RLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGI 155
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS + +LPLFV A+ +TA AGAIT+LLTDRN
Sbjct: 156 SSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRNF 215
Query: 639 NTSFXDPAGGGDPI 680
NTSF DPAGGGDPI
Sbjct: 216 NTSFYDPAGGGDPI 229
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 165 bits (402), Expect = 7e-40
Identities = 89/194 (45%), Positives = 109/194 (56%), Gaps = 2/194 (1%)
Frame = +3
Query: 105 RAELGNPGSLI--GXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG I G Q+YN ++TAHA N VP+++GAPD+AFP
Sbjct: 39 RMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFP 98
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
R+NNI F +VE G+GTG TVYPPLS +H G +VDLAIFSLHL+G+
Sbjct: 99 RLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHLSGV 158
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS + +LPLFV +V +TAF AGAIT+LLTDRN
Sbjct: 159 SSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSLPVLAGAITMLLTDRNF 218
Query: 639 NTSFXDPAGGGDPI 680
NT+F DPAGGGDPI
Sbjct: 219 NTTFFDPAGGGDPI 232
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 164 bits (398), Expect = 2e-39
Identities = 91/185 (49%), Positives = 104/185 (56%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAEL PG+L+G DQIYN IVTAHA N L+PL++GAPD+AFPR+
Sbjct: 27 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRM 86
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F +E GAGTG TVYPPL+ N+AH G SVDL IFSLHLAGISS
Sbjct: 87 NNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISS 146
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S Q PLFV AV ITA A IT+LLTDRNLNT
Sbjct: 147 ILGAINFITTIMNMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNT 206
Query: 645 SFXDP 659
+F DP
Sbjct: 207 TFFDP 211
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 159 bits (386), Expect = 6e-38
Identities = 87/194 (44%), Positives = 109/194 (56%), Gaps = 2/194 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL P + L+G QIYN ++TAHA N LVP+++G+PD+AFP
Sbjct: 44 RMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAFP 103
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
R+NNI F +VE G GTG TVYPPLSS +H G +VDLAIFSLH++G
Sbjct: 104 RLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSGGAVDLAIFSLHISGA 163
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS S ++PLFV ++ +TAF AGAIT+LLTDRN
Sbjct: 164 SSILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAFLLLLAVPVLAGAITMLLTDRNF 223
Query: 639 NTSFXDPAGGGDPI 680
NTSF D +GGGDPI
Sbjct: 224 NTSFFDASGGGDPI 237
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 150 bits (364), Expect = 3e-35
Identities = 86/194 (44%), Positives = 104/194 (53%), Gaps = 2/194 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PGS L G Q++N +V HA N ++PL++GA D++FP
Sbjct: 37 RMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYMLPLMIGATDMSFP 96
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
RIN+I F +VE+GAGTG TVYPPLSS AH G SVDLAIFSLHL I
Sbjct: 97 RINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFSLHLTSI 156
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS S ++PLFV A+ ITAF + IT+LL DRN
Sbjct: 157 SSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLLSLPVLSAGITMLLMDRNF 216
Query: 639 NTSFXDPAGGGDPI 680
NTSF + AGGGDPI
Sbjct: 217 NTSFFEVAGGGDPI 230
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 149 bits (362), Expect = 5e-35
Identities = 86/194 (44%), Positives = 103/194 (53%), Gaps = 2/194 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PGS L G Q++N +V HA N L+PL++GA D AFP
Sbjct: 37 RLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFP 96
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
RINNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL I
Sbjct: 97 RINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSI 156
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS + +LPLFV ++ ITAF + IT+LL DRN
Sbjct: 157 SSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNF 216
Query: 639 NTSFXDPAGGGDPI 680
NTSF + +GGGDPI
Sbjct: 217 NTSFFEVSGGGDPI 230
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 149 bits (362), Expect = 5e-35
Identities = 86/194 (44%), Positives = 103/194 (53%), Gaps = 2/194 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PGS L G Q++N +V HA N L+PL++GA D AFP
Sbjct: 37 RLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFP 96
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
RINNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL I
Sbjct: 97 RINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSI 156
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS + +LPLFV ++ ITAF + IT+LL DRN
Sbjct: 157 SSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNF 216
Query: 639 NTSFXDPAGGGDPI 680
NTSF + +GGGDPI
Sbjct: 217 NTSFFEVSGGGDPI 230
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 146 bits (355), Expect = 3e-34
Identities = 84/193 (43%), Positives = 100/193 (51%), Gaps = 1/193 (0%)
Frame = +3
Query: 105 RAELGNPG-SLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R EL PG I +Q+YN+I+TAHA N L+PL LG PD+ FPR
Sbjct: 38 RLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGNFLLPLGLGGPDMGFPR 97
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 461
+NNI + +ENG GTG T+YPPLS +H G SVDLAIF LHL+GIS
Sbjct: 98 LNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSGPSVDLAIFGLHLSGIS 157
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S +L LF AV ITA AG IT++LTDRN N
Sbjct: 158 SLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLLLSLPVLAGGITMVLTDRNFN 217
Query: 642 TSFXDPAGGGDPI 680
TSF + AGGGDPI
Sbjct: 218 TSFFEVAGGGDPI 230
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 144 bits (348), Expect = 2e-33
Identities = 82/194 (42%), Positives = 102/194 (52%), Gaps = 2/194 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG L G +Q++N +V HA N ++PL++GA D AFP
Sbjct: 37 RLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNYMLPLMIGATDTAFP 96
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
RINNI F +VE+GAGTG TVYPPL+S AH G SVDLAIF+LH+ I
Sbjct: 97 RINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGPSVDLAIFALHMTSI 156
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS + +LPLFV A+ ITA + +T+LL DRN
Sbjct: 157 SSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLLTLPVLSAGVTMLLLDRNF 216
Query: 639 NTSFXDPAGGGDPI 680
NTSF + AGGGDPI
Sbjct: 217 NTSFFEVAGGGDPI 230
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 141 bits (341), Expect = 2e-32
Identities = 79/193 (40%), Positives = 99/193 (51%), Gaps = 1/193 (0%)
Frame = +3
Query: 105 RAELGNPG-SLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R EL PG I +Q+YN+I+T+H N L+P+++G PD+AFPR
Sbjct: 64 RLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGNFLLPILIGGPDMAFPR 123
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 461
+NN+ + I+ENG GTG T+YPPLS +H VDL IF LHL+GIS
Sbjct: 124 LNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSSMGVDLGIFGLHLSGIS 183
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S +L LF AV ITA A AIT+LLTDRNLN
Sbjct: 184 SLLGAINFIATLLNMRSPGIKLHKLALFGWAVVITAVLLLLSLPVLAAAITMLLTDRNLN 243
Query: 642 TSFXDPAGGGDPI 680
TSF + AGGGD I
Sbjct: 244 TSFYELAGGGDAI 256
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 138 bits (334), Expect = 1e-31
Identities = 77/145 (53%), Positives = 86/145 (59%)
Frame = +3
Query: 246 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 425
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 426 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 605
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 606 AITILLTDRNLNTSFXDPAGGGDPI 680
AIT+LLTDRN+NTSF DPAGGGDPI
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPI 148
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 137 bits (332), Expect = 2e-31
Identities = 79/194 (40%), Positives = 91/194 (46%), Gaps = 2/194 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG L G YN I T H N VP+++GAPD++FP
Sbjct: 40 RLELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILFGGFGNYFVPILIGAPDMSFP 99
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
R+NN F E G GTG TVYPPLSS +H G SVDL IFS HL GI
Sbjct: 100 RLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSHSGASVDLMIFSFHLVGI 159
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
S LPLFV +V +T+F A AIT+LL DRN
Sbjct: 160 GSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSFLVIVAIPVLAAAITLLLFDRNF 219
Query: 639 NTSFXDPAGGGDPI 680
NTSF DP GGGD +
Sbjct: 220 NTSFYDPVGGGDVV 233
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 134 bits (323), Expect = 2e-30
Identities = 71/187 (37%), Positives = 98/187 (52%)
Frame = +3
Query: 120 NPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 299
NP L+ Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 300 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 479
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 480 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDP 659
+ +LPLFV +V ITA A +T+LL DRN NTSF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 660 AGGGDPI 680
+GGGDP+
Sbjct: 241 SGGGDPL 247
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 134 bits (323), Expect = 2e-30
Identities = 71/187 (37%), Positives = 98/187 (52%)
Frame = +3
Query: 120 NPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 299
NP L+ Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 300 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 479
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 480 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDP 659
+ +LPLFV +V ITA A +T+LL DRN NTSF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 660 AGGGDPI 680
+GGGDP+
Sbjct: 241 SGGGDPL 247
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 134 bits (323), Expect = 2e-30
Identities = 71/187 (37%), Positives = 98/187 (52%)
Frame = +3
Query: 120 NPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 299
NP L+ Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 300 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 479
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 480 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDP 659
+ +LPLFV +V ITA A +T+LL DRN NTSF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 660 AGGGDPI 680
+GGGDP+
Sbjct: 241 SGGGDPL 247
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 134 bits (323), Expect = 2e-30
Identities = 71/187 (37%), Positives = 98/187 (52%)
Frame = +3
Query: 120 NPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 299
NP L+ Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 300 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 479
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 480 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDP 659
+ +LPLFV +V ITA A +T+LL DRN NTSF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 660 AGGGDPI 680
+GGGDP+
Sbjct: 241 SGGGDPL 247
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 130 bits (315), Expect = 2e-29
Identities = 77/194 (39%), Positives = 97/194 (50%), Gaps = 2/194 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL N GS L G Q +N ++TAHA N L+PL+LGA D+AF
Sbjct: 42 RLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFA 101
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
R+NNI F +VE GAGTG TVY PL+ +H G +VDLAIFSLHL+G
Sbjct: 102 RLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHSGPAVDLAIFSLHLSGF 161
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS ++ +PLF AV TA A +T+ + DRN
Sbjct: 162 SSLLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLLSLPVLAAGLTMGIFDRNF 221
Query: 639 NTSFXDPAGGGDPI 680
NTSF + AGGGD +
Sbjct: 222 NTSFFEYAGGGDAV 235
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 127 bits (307), Expect = 2e-28
Identities = 68/194 (35%), Positives = 98/194 (50%), Gaps = 2/194 (1%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQ--IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
+A LG L G ++N ++T H N +PL++GAPD+AFP
Sbjct: 142 QALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFP 201
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
R+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G
Sbjct: 202 RLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGA 261
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
SS + ++PLF +V +TA+ AGAIT+LLTDRN
Sbjct: 262 SSILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNF 321
Query: 639 NTSFXDPAGGGDPI 680
T+F DPAGGGDPI
Sbjct: 322 GTTFFDPAGGGDPI 335
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 127 bits (306), Expect = 3e-28
Identities = 77/197 (39%), Positives = 97/197 (49%), Gaps = 5/197 (2%)
Frame = +3
Query: 105 RAELGNPG-SLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R EL PG I +Q+YN+I+TAHA N L+PL++G PD+AFPR
Sbjct: 66 RLELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGNFLMPLMIGGPDMAFPR 125
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNIAHRGRSVDLAIFSLHL 449
+NNI F I+E G GTG T+ YPPLS +H G SVDLAIF+LHL
Sbjct: 126 LNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSHSGPSVDLAIFALHL 185
Query: 450 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 629
+G+SS +L LF + IT++LTD
Sbjct: 186 SGVSSLLGSINFITTVANMRTPGIKLHKLALF-------GWATWSSRSRYFLGITMVLTD 238
Query: 630 RNLNTSFXDPAGGGDPI 680
RN NTSF + AGGGDPI
Sbjct: 239 RNFNTSFFEVAGGGDPI 255
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 123 bits (296), Expect = 5e-27
Identities = 71/180 (39%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Frame = +3
Query: 150 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 329
++N ++TAH N VP+++GAPD+AFPR+NNI F
Sbjct: 93 LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152
Query: 330 XXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 497
V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS
Sbjct: 153 LGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTI 211
Query: 498 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDPAGGGDP 677
+ ++PLFV +V +TAF A AIT+LLTDRN T+F D AGGGDP
Sbjct: 212 LNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDP 271
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 121 bits (291), Expect = 2e-26
Identities = 72/169 (42%), Positives = 85/169 (50%), Gaps = 2/169 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG L G Q+YN I+TAHA N LVP+++GAPD+AFP
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFP 95
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
R+NNI F VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GI
Sbjct: 96 RLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGI 155
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 605
SS + +LPLFV A+ +TA AG
Sbjct: 156 SSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAG 204
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 105 bits (253), Expect = 8e-22
Identities = 61/185 (32%), Positives = 80/185 (43%)
Frame = +3
Query: 126 GSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 305
G L G Q YN ++T+H N +P++ G PD+ FPR+NN+ F
Sbjct: 48 GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWM 107
Query: 306 XXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXX 485
+ E G G G T+YP L H + D +F++HL GISS
Sbjct: 108 YLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINL 167
Query: 486 XXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDPAG 665
SF LF+ A ITA AG +T++L DRN NTSF D G
Sbjct: 168 LGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLAGGVTLILCDRNFNTSFYDVVG 227
Query: 666 GGDPI 680
GGD I
Sbjct: 228 GGDLI 232
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 105 bits (252), Expect = 1e-21
Identities = 61/194 (31%), Positives = 85/194 (43%), Gaps = 2/194 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL +PG G Q+YN+++T H N ++PL+LGAP++AFP
Sbjct: 47 RFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFGNWMLPLMLGAPEMAFP 106
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
R+N + F + G G+ T YPPLS S+D I LH GI
Sbjct: 107 RVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQPELSLDTMILGLHTVGI 165
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
S + DQ+ +FV +T+F AG++ LL DRN
Sbjct: 166 GSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSVPVLAGSLLFLLLDRNF 225
Query: 639 NTSFXDPAGGGDPI 680
NTSF D GG+P+
Sbjct: 226 NTSFYDTKKGGNPL 239
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 102 bits (244), Expect = 9e-21
Identities = 59/193 (30%), Positives = 88/193 (45%), Gaps = 1/193 (0%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL +PG + +Y++I+T HA N +PL++ D++ PR+
Sbjct: 40 RIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGNWFIPLMIKIKDLSMPRL 99
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ + G G G T+YPPLS++ G +DLA+FSLH+AG+SS
Sbjct: 100 NNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDGLPIDLAVFSLHMAGMSS 159
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
F L P+ + + T+ A +T+LL DR+ +
Sbjct: 160 IAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSVPVLAAGLTLLLLDRHFS 219
Query: 642 TSFXDPAGGGDPI 680
TSF P GGGDPI
Sbjct: 220 TSFYYPEGGGDPI 232
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 90.6 bits (215), Expect = 3e-17
Identities = 49/96 (51%), Positives = 57/96 (59%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAELG PG+L+G DQ N IVTAHA N LVPL++GAPD+AFPR+
Sbjct: 39 RAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWLVPLMIGAPDMAFPRM 98
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 392
NN+ F VE GAGTG TVYPPL+
Sbjct: 99 NNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 87.0 bits (206), Expect = 4e-16
Identities = 51/120 (42%), Positives = 61/120 (50%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R ELG PGSL+ DQ+YN +VTAH N LVPL+LGAPD+AFPR+
Sbjct: 22 RTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRM 81
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F + G + PL G SVDLAIF LHLAG+SS
Sbjct: 82 NNMSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSS 139
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 85.4 bits (202), Expect = 1e-15
Identities = 67/191 (35%), Positives = 78/191 (40%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R L G +IG QI VTA A L PL +GAP +A PR+
Sbjct: 28 RXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGAPXMAXPRL 87
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
N+ F + G G VYPP SS +AH +VDL IF LHLAGISS
Sbjct: 88 XNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFXLHLAGISS 147
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
++ LF A AIT+L R N
Sbjct: 148 XLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPVLAAAITMLXXXRXXNX 207
Query: 645 SFXDPAGGGDP 677
SF P G P
Sbjct: 208 SFFXPXXXGXP 218
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 81.0 bits (191), Expect = 2e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +3
Query: 246 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 425
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 426 LAIFS 440
LAI+S
Sbjct: 61 LAIYS 65
Score = 38.7 bits (86), Expect = 0.13
Identities = 19/44 (43%), Positives = 21/44 (47%)
Frame = +2
Query: 545 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIX*SCWRRRP 676
CM C +Y TCFS S+Y IIN K KY I W P
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSP 140
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 80.6 bits (190), Expect = 3e-14
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 1/178 (0%)
Frame = +3
Query: 150 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 329
+YN I T H N +P++ G+P++A+PRIN+I
Sbjct: 58 LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117
Query: 330 XXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXX 506
E G GTG T+YPPLS+++ +VD+ IF L ++G++S
Sbjct: 118 ILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHL 177
Query: 507 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDPAGGGDPI 680
+ L + ++ IT+ G + +LL+D + NT F DP GDPI
Sbjct: 178 RAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPI 235
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 78.6 bits (185), Expect = 1e-13
Identities = 53/186 (28%), Positives = 76/186 (40%)
Frame = +3
Query: 123 PGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 302
PG + + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 303 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 482
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 483 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDPA 662
+F + LFV + AGA+T+L D+ L T+F +PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
Query: 663 GGGDPI 680
GGDP+
Sbjct: 180 KGGDPL 185
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 78.2 bits (184), Expect = 2e-13
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 3/195 (1%)
Frame = +3
Query: 105 RAELGNPG-SLIGXD--QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 275
R EL G +I D +IYN + T H N L P++LG D+ +
Sbjct: 43 RTELSMSGLKIITMDTLEIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGYCDVVY 102
Query: 276 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 455
PR+N +E G+GTG T+YPPLS+++++ G +D IF L AG
Sbjct: 103 PRVNLYSLLFQPIGFVLVVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAG 160
Query: 456 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 635
I+S D++ ++ +T+F ++ DR+
Sbjct: 161 IASTLSSVNFITTFTSVKTIGFVIDRISPAAWSIVLTSFLLLLSLPVVTAVFLMVFLDRH 220
Query: 636 LNTSFXDPAGGGDPI 680
NT F + + GDP+
Sbjct: 221 YNTMFFESSNSGDPV 235
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 75.8 bits (178), Expect = 9e-13
Identities = 57/192 (29%), Positives = 82/192 (42%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P S++ D +YN VT H N L+P PD+ FPR+
Sbjct: 35 RLQLAFP-SILTSD-VYNAFVTLHGLVMVFFAAMPTAIGFFANLLIPYHCNLPDLLFPRM 92
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
N + F ++ + A G T YPPLSS SV+ ++FSLHLAGI+S
Sbjct: 93 NALSFWLMPFSLSL-----LLFSMASAGWTFYPPLSS----LSPSVEFSVFSLHLAGIAS 143
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ L LF ++ + + A IT++LTD++L T
Sbjct: 144 LISSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSLPVLAVGITLILTDKHLGT 201
Query: 645 SFXDPAGGGDPI 680
F D GGDP+
Sbjct: 202 CFYDATMGGDPL 213
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 74.1 bits (174), Expect = 3e-12
Identities = 56/184 (30%), Positives = 75/184 (40%)
Frame = +3
Query: 129 SLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXX 308
+L+ D +YN +VT H N +P+ L D+ PR+N++
Sbjct: 145 NLVSVD-VYNYLVTNHGVAMIFFFLMPILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLM 203
Query: 309 XXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 488
G G G T+YPPLS G VD +FSLHLAG+SS
Sbjct: 204 VPSIFYMELSLYY--GCGIGWTLYPPLSI-WEGSGFGVDYLMFSLHLAGVSSLIGSVNFI 260
Query: 489 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDPAGG 668
S + V A T+ A IT+LL DRN T+F +P+GG
Sbjct: 261 STIFSRLSFNCS-----IIVWAYLFTSVLLLLSLPVLASGITMLLFDRNFGTAFFEPSGG 315
Query: 669 GDPI 680
GDPI
Sbjct: 316 GDPI 319
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 73.7 bits (173), Expect = 4e-12
Identities = 50/182 (27%), Positives = 70/182 (38%), Gaps = 6/182 (3%)
Frame = +3
Query: 153 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 332
Y I T H N L+PL++GA D+AFPR+N F
Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145
Query: 333 XXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 509
G AG G T Y PLS+N+ G L + ++ + G+SS
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205
Query: 510 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF-----XDPAGGGD 674
++ +LPL + + +TA A +LL DR+ T F GGGD
Sbjct: 206 APGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGD 265
Query: 675 PI 680
PI
Sbjct: 266 PI 267
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 72.9 bits (171), Expect = 6e-12
Identities = 60/196 (30%), Positives = 82/196 (41%), Gaps = 8/196 (4%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL +PG + + YN+++T+H N L+PL++GA D+AFPRI
Sbjct: 120 RIELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NYLIPLLIGADDMAFPRI 178
Query: 285 NNIRFXXX--XXXXXXXXXXXIVE-NGAGTG*TVYPPLS-----SNIAHRGRSVDLAIFS 440
N I F I E A TG T+Y PLS N A+ G VDL +
Sbjct: 179 NAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGEGMGNQANAG--VDLMLLG 236
Query: 441 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 620
LHL+G+S+ S+ L +F + + AI +L
Sbjct: 237 LHLSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQSGLILFAFPLLGSAIMML 296
Query: 621 LTDRNLNTSFXDPAGG 668
L DRN TSF GG
Sbjct: 297 LFDRNFGTSFFAGEGG 312
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 72.5 bits (170), Expect = 9e-12
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +3
Query: 384 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 563
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 564 TAFXXXXXXXXXAGAITILLTDR 632
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.5 bits (78), Expect = 1.2
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +2
Query: 218 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 343
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 71.7 bits (168), Expect = 2e-11
Identities = 55/192 (28%), Positives = 73/192 (38%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL P ++YN ++T H N L+PL++G D+AFPR+
Sbjct: 53 RTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVGTEDMAFPRL 111
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
N + F V G T YPPLS G +L I SL L G SS
Sbjct: 112 NAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWILSLLLVGTSS 168
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+PLF A+ T+ A A+ +L D T
Sbjct: 169 ILGAINFVTTILKMRIKDMDLHSMPLFCWAMLATSSLILLSTPVLASALILLSFDLIAGT 228
Query: 645 SFXDPAGGGDPI 680
SF +P GGGDP+
Sbjct: 229 SFFNPVGGGDPV 240
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 70.9 bits (166), Expect = 3e-11
Identities = 43/101 (42%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG L G Q+YN I+TAHA N LVP+++GAPD+AFP
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFP 95
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 401
R+NNI F VE GAGTG TV LS I
Sbjct: 96 RLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKCKLSQII 136
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 70.1 bits (164), Expect = 5e-11
Identities = 49/192 (25%), Positives = 73/192 (38%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P + +++N + T H N VPL++GA D+AFPR+
Sbjct: 58 RIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMPVLTGFA-NYFVPLMIGARDVAFPRL 116
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
N+ F + + G Y PLSS + VD I L + GI S
Sbjct: 117 NSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSSLQGVDYWIIGLLIMGIGS 176
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S ++PLFV + + A A+ +LL DR L +
Sbjct: 177 VSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILALPALNSALAMLLIDRWLGS 236
Query: 645 SFXDPAGGGDPI 680
+F DP GG +
Sbjct: 237 AFFDPTRGGSAV 248
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 68.9 bits (161), Expect = 1e-10
Identities = 50/192 (26%), Positives = 74/192 (38%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL PG I YN + T H N L+P+++GA D+AFP++
Sbjct: 61 RLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIGAKDVAFPKL 120
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
N + F +V+ GA TG T Y P S+ + V L F L G SS
Sbjct: 121 NLLSF-YVYLAGAVVALFGMVQGGADTGWTFYTPYSTTTITKVVPVLLGAFIL---GFSS 176
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ +LPLFV ++ T+ ++ ++ +
Sbjct: 177 ILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLLVAVEHAFGW 236
Query: 645 SFXDPAGGGDPI 680
DPA GGDP+
Sbjct: 237 GIFDPARGGDPV 248
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 68.5 bits (160), Expect = 1e-10
Identities = 54/193 (27%), Positives = 75/193 (38%), Gaps = 1/193 (0%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL PG I YN T H N ++PL+LGA D+AFPR+
Sbjct: 68 RVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLMLGAKDVAFPRL 127
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
N + ++ G TG T Y P S AH +V +F + G SS
Sbjct: 128 NLLSL-YIYLAGAVLALWGMLNGGLDTGWTFYTPYS---AHTTTTVAPVLFGAFIIGFSS 183
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL-N 641
++ ++PLFV A+ T+ G + +L+T NL
Sbjct: 184 IVTGINFIVTCHTMRAPGITWFKMPLFVWAIYATS-CIQVLATPVIGLLLVLVTVENLFG 242
Query: 642 TSFXDPAGGGDPI 680
DPA GGDP+
Sbjct: 243 FGMFDPARGGDPV 255
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 68.5 bits (160), Expect = 1e-10
Identities = 52/195 (26%), Positives = 75/195 (38%), Gaps = 3/195 (1%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL P + + +YN + T H N L+P ++GAPD+AFP++
Sbjct: 62 RGELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDMAFPKL 120
Query: 285 NNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVDLAIFSLHLAG 455
N F G A +G YPP+S + + H L I ++ L+G
Sbjct: 121 NAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEFLWILAVALSG 180
Query: 456 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 635
ISS F ++P+FV G +LL D +
Sbjct: 181 ISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTGGAVMLLFDLS 240
Query: 636 LNTSFXDPAGGGDPI 680
TSF P GGGDP+
Sbjct: 241 FGTSFFRPEGGGDPV 255
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 67.7 bits (158), Expect = 2e-10
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 2/179 (1%)
Frame = +3
Query: 150 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF-XXXXXXXXX 326
IYN +T H N L+P+++G +++ PR+N I F
Sbjct: 63 IYNNWITIHGLIMLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIF 122
Query: 327 XXXXXIVENGAGTG*TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 503
++ +G T+YPPLS+ A G ++DL++ +H+ GISS
Sbjct: 123 VISNVLMSKPISSGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKY 182
Query: 504 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDPAGGGDPI 680
+F + ++ ++ +T+ AIT LL DRN+N++ D GDP+
Sbjct: 183 NRHVGLTFMNINIYNFSIIVTSILLIGSLPILGVAITGLLLDRNINSTIYDVI--GDPV 239
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 67.3 bits (157), Expect = 3e-10
Identities = 48/193 (24%), Positives = 73/193 (37%), Gaps = 1/193 (0%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P + + YN I+T H N +VPL+LGA D+A PR+
Sbjct: 50 RTQLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVALPRV 109
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 461
N + GA G T Y P S A VD + ++ L G S
Sbjct: 110 NAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILLLGFS 166
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S S ++P++V +V + A ++L +R +
Sbjct: 167 SLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLERKIG 226
Query: 642 TSFXDPAGGGDPI 680
S+ +PA GGDP+
Sbjct: 227 LSWFNPAVGGDPV 239
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 66.1 bits (154), Expect = 7e-10
Identities = 52/191 (27%), Positives = 74/191 (38%), Gaps = 1/191 (0%)
Frame = +3
Query: 105 RAELGNPGS-LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R +L P + IG D+ YN I T H LVPL++G IAFPR
Sbjct: 55 RLQLAQPEARFIGPDR-YNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMVGTRHIAFPR 112
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 461
+N + V+ G G Y PLS G+ D+ + +S
Sbjct: 113 LNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWAQMITFTEVS 172
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
+ S D++PLFV ++ +T+F A T L+ DR +
Sbjct: 173 ALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIASTSLILDRLVG 232
Query: 642 TSFXDPAGGGD 674
T F +PA GGD
Sbjct: 233 THFFNPAEGGD 243
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 65.7 bits (153), Expect = 1e-09
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +3
Query: 105 RAELGNPGSLI--GXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG+ I G Q+YN ++TAHA N VP+++G+PD+AFP
Sbjct: 40 RMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGSPDMAFP 99
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 377
R+NNI F +VE G G+G TV
Sbjct: 100 RLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 65.3 bits (152), Expect = 1e-09
Identities = 49/190 (25%), Positives = 70/190 (36%), Gaps = 1/190 (0%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RAEL PG ++ +N + T H N ++PL +GAPD+AFPR+
Sbjct: 64 RAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFA-NYVLPLQIGAPDVAFPRL 122
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 461
N F + GA G T+Y PLS I G D+ I + GI
Sbjct: 123 NAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHSPGLGSDMWIVGVGATGIG 182
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S + ++P+F + + + A +L DR L
Sbjct: 183 SVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLIFPLLLAAALGVLYDRKLG 242
Query: 642 TSFXDPAGGG 671
DPA GG
Sbjct: 243 GHLYDPANGG 252
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 64.5 bits (150), Expect = 2e-09
Identities = 40/101 (39%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = +3
Query: 105 RAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL N GS L G Q +N ++TAHA N L+PL+LGA D+AF
Sbjct: 42 RLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFA 101
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 401
R+NNI F +VE GAGTG TV SS +
Sbjct: 102 RLNNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 64.1 bits (149), Expect = 3e-09
Identities = 50/194 (25%), Positives = 76/194 (39%), Gaps = 2/194 (1%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL + +YN ++T+H N +PL++ A D+AFPRI
Sbjct: 94 RTELATSSETLISPSLYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAFPRI 152
Query: 285 NNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
N I F ++ A T T+Y PLS ++ +VD+ + LHL G+
Sbjct: 153 NAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHLTGV 210
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
S+ + L +F + + A+ +LL DRN
Sbjct: 211 SATMGAINFIATIFTERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLDRNF 270
Query: 639 NTSFXDPAGGGDPI 680
T+F A GGDPI
Sbjct: 271 GTTFFTVA-GGDPI 283
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 64.1 bits (149), Expect = 3e-09
Identities = 50/190 (26%), Positives = 73/190 (38%), Gaps = 2/190 (1%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P S Y VT H N +VPL +GA D+AFPR+
Sbjct: 47 RVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFASPFAFGLA-NYIVPLQIGARDLAFPRL 105
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 461
N + + E+GA G T+Y PL++ I G +DLA ++ L +S
Sbjct: 106 NALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYTPGIGLDLAALAIFLFSLS 165
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
+ ++P+F ++ T +LL DRNL
Sbjct: 166 VTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWAFPPLMVGGALLLLDRNLG 225
Query: 642 TS-FXDPAGG 668
T F +PAGG
Sbjct: 226 TEFFLNPAGG 235
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 62.1 bits (144), Expect = 1e-08
Identities = 48/192 (25%), Positives = 69/192 (35%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +LG P + +YN + T H N +VPL++GA D+AFPR+
Sbjct: 57 RIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMPLNVGLG-NYMVPLMIGARDMAFPRL 115
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
N + V G Y PL+ VD I + L G++S
Sbjct: 116 NALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFAPTAGVDYWIVGIGLTGVAS 175
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ +++PLFV + AF A LL DR+ T
Sbjct: 176 IAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAFILIFAFPVLTVATIQLLFDRHFGT 235
Query: 645 SFXDPAGGGDPI 680
F P GGD +
Sbjct: 236 RFFLPNLGGDAV 247
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 60.9 bits (141), Expect = 3e-08
Identities = 51/194 (26%), Positives = 74/194 (38%), Gaps = 2/194 (1%)
Frame = +3
Query: 105 RAELGNPGSLIGXD-QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R EL G I D +YNT + H N +PL++GA D+AFPR
Sbjct: 40 RLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKDVAFPR 99
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 461
+N + + + T YPP S I H + FS+ L G +
Sbjct: 100 VNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPPYSI-ITHGNTA--FYTFSVLLLGFA 156
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG-AITILLTDRNL 638
S +++L +FV A + AF G A+T+L D+ +
Sbjct: 157 SILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LAAFVLQLIFVPVLGTAVTMLTFDKYI 215
Query: 639 NTSFXDPAGGGDPI 680
T F D A GGD +
Sbjct: 216 GTHFFDAAAGGDAL 229
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 60.5 bits (140), Expect = 4e-08
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 4/177 (2%)
Frame = +3
Query: 147 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 326
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 327 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 494
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
Query: 495 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDPAG 665
+ +LPL + A+ ITA A ++L DR + T F P G
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEG 262
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 60.5 bits (140), Expect = 4e-08
Identities = 46/192 (23%), Positives = 67/192 (34%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RA+L P + YN I T H N +VPL +GA D+AFP +
Sbjct: 79 RAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAFPYL 137
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
NN+ F ++ G T Y PL+SN G + + L +AGI +
Sbjct: 138 NNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLGLQIAGIGT 197
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ ++P+F IT A+ +L DR
Sbjct: 198 LMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLTVALALLSFDRLFGA 257
Query: 645 SFXDPAGGGDPI 680
F GG P+
Sbjct: 258 HFFTLEAGGMPM 269
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 9e-08
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +3
Query: 342 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 58.0 bits (134), Expect = 2e-07
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +3
Query: 105 RAELGNPGS--LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL PG+ L G Q++N +V HA N L+PL++GA D++F
Sbjct: 37 RLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGASDMSFA 96
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 377
R+NNI F +VE+GAGTG TV
Sbjct: 97 RLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 56.0 bits (129), Expect = 8e-07
Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 6/155 (3%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 407
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 408 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 587
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 588 XXXXAGAITILLTDRNLNTSF-----XDPAGGGDP 677
A +LL +R+L F DPA GDP
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDP 238
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 55.6 bits (128), Expect = 1e-06
Identities = 39/192 (20%), Positives = 71/192 (36%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P + Q YN ++T H N +VPL +GA D++FP +
Sbjct: 50 RIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAMPLLFALM-NAVVPLQIGARDVSFPFL 108
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
N + F + G T Y LS + +G +D + L ++G+ +
Sbjct: 109 NALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYASLS--LHSKGHGIDFFVLGLQISGLGT 166
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
++ +LPLF + + + +++ DR T
Sbjct: 167 LIAGINFLATIINMRAPGMTYMRLPLFTWTTFVASALILFAFPPLTVGLALMMLDRLFGT 226
Query: 645 SFXDPAGGGDPI 680
+F +P GG+ +
Sbjct: 227 NFFNPELGGNTV 238
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 55.2 bits (127), Expect = 1e-06
Identities = 45/192 (23%), Positives = 69/192 (35%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P + + Y+++ T H N L PL+LG+ D+AFPR+
Sbjct: 75 RIQLARPNATVLTPAQYDSLFTMHGVTMIFLYALPVLSGFA-NYLWPLMLGSRDMAFPRL 133
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
+ + G Y PL+S G ++D+ + L GIS+
Sbjct: 134 TAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSAGANIDIYGLGMILLGIST 193
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S D+LP+ V + + A +L DRN T
Sbjct: 194 TGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAVPSVSLAFLLLWLDRNAGT 253
Query: 645 SFXDPAGGGDPI 680
F D A GG P+
Sbjct: 254 HFFDVAHGGRPL 265
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 54.4 bits (125), Expect = 2e-06
Identities = 52/193 (26%), Positives = 75/193 (38%), Gaps = 1/193 (0%)
Frame = +3
Query: 105 RAELGNPGS-LIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
RAEL PG+ I +N + T H N VP+++ D+A+P+
Sbjct: 46 RAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMVRYKDMAYPK 104
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 461
+N I F + T PP S I+ G + D+ IF L + GIS
Sbjct: 105 LNAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISAPGPAADMWIFGLKILGIS 158
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S S Q+PL + ++ A A+ +LLTDR
Sbjct: 159 SILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVALPTFAAALLMLLTDRLGV 218
Query: 642 TSFXDPAGGGDPI 680
+ F +PA GGDPI
Sbjct: 219 SGFFNPAVGGDPI 231
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 52.4 bits (120), Expect = 1e-05
Identities = 43/174 (24%), Positives = 62/174 (35%)
Frame = +3
Query: 153 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 332
Y+ I TAH N +VPL +GA D+AFP +N++ F
Sbjct: 100 YDQIFTAHGVIMIIFMAMPFMTGLM-NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVN 158
Query: 333 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 512
V N A TG YPPL+ VD I++L ++GI +
Sbjct: 159 LSLGVGNFARTGWVAYPPLAELGFSPDVGVDYYIWALQISGIGTTLTAINFLVTVIKMRA 218
Query: 513 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDPAGGGD 674
+P+F GA+ +L DR L+ F GG+
Sbjct: 219 PGMKLMDMPIFTWTCTWANVLIATSFPILTGALAMLALDRYLDFHFFTAELGGN 272
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 52.4 bits (120), Expect = 1e-05
Identities = 43/172 (25%), Positives = 66/172 (38%), Gaps = 4/172 (2%)
Frame = +3
Query: 147 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 326
+ Y +VT H N L+PL +GA D+A +N + +
Sbjct: 100 EFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSSVI 159
Query: 327 XXXXXIVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 494
+E G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 160 MFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYITT 219
Query: 495 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 650
SF +LPL + A ITA A +L+ DR+L TSF
Sbjct: 220 VINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSF 271
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 52.4 bits (120), Expect = 1e-05
Identities = 42/192 (21%), Positives = 68/192 (35%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P + + YN + T H L+PL++GA D+ FPR+
Sbjct: 81 RLQLMVPENTFLSSETYNQLFTMHGTIMMFLFAIPMLEGFAVY-LIPLMIGARDLVFPRL 139
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
+ + + G +Y PLS++ G S D + + LA I+S
Sbjct: 140 GAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGLSADFWLIGITLAEIAS 199
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S ++P+ + + TAF +L +R L
Sbjct: 200 VTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPPLIIGSILLEAERLLGL 259
Query: 645 SFXDPAGGGDPI 680
F D GGDP+
Sbjct: 260 PFFDHTLGGDPL 271
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 51.2 bits (117), Expect = 2e-05
Identities = 42/192 (21%), Positives = 66/192 (34%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RA+L P S + YN + T H L+P +LG+ D+AFPR+
Sbjct: 55 RAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLLGSRDLAFPRL 113
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
F + +G +YPPLSS + G + D + + IS+
Sbjct: 114 TAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWLIGITFVEISA 173
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S ++P+F +TA +L +R +
Sbjct: 174 IAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPPLILGSILLELERAFDM 233
Query: 645 SFXDPAGGGDPI 680
F A GGD +
Sbjct: 234 PFFQAAAGGDAL 245
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 50.4 bits (115), Expect = 4e-05
Identities = 42/176 (23%), Positives = 61/176 (34%)
Frame = +3
Query: 153 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 332
Y+ I TAH N VPL +GA D+AFP +N++ F
Sbjct: 99 YDQIFTAHGVIMIIFMAMPFFTGLM-NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVN 157
Query: 333 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 512
V A TG YPPL+ G VD I++L L+G+ +
Sbjct: 158 ISLGVGEFAKTGWVAYPPLAGIQYSPGVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRA 217
Query: 513 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDPAGGGDPI 680
+P+F A+ +L DR L+ GG+P+
Sbjct: 218 PGMKLMDMPIFTWTCTWANVLIVASFPILTAALALLTVDRYLDFHIFTNELGGNPM 273
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 49.6 bits (113), Expect = 7e-05
Identities = 50/191 (26%), Positives = 71/191 (37%), Gaps = 6/191 (3%)
Frame = +3
Query: 105 RAELGNPG--SLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R +LG PG S I +Q Y +T H N L+PL++GA D+ FP
Sbjct: 64 RLQLGFPGTFSFIDANQ-YLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFP 122
Query: 279 RINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGRSVDLAIFSLHL 449
+N + + V G G G T+YPP + S + + L + SL L
Sbjct: 123 YVNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLMLSSLIL 182
Query: 450 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXXXXAGAITILLT 626
I + +LPL V + T G++ +LL
Sbjct: 183 FIIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPALFVGSVMLLL- 241
Query: 627 DRNLNTSFXDP 659
DR L TSF P
Sbjct: 242 DRLLGTSFFMP 252
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 47.2 bits (107), Expect = 4e-04
Identities = 37/140 (26%), Positives = 44/140 (31%)
Frame = +2
Query: 224 IWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YR 403
I KL P NK +KIL TPL Y N C K C + +NSLP Y
Sbjct: 62 IRKLNTPSNIGSTSHGFPPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYL 121
Query: 404 T*RKIRRSCYFFTTFSXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXX 583
T R +F T CM +YS
Sbjct: 122 TLGPFRSYNHFCPTSCSSVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTS 181
Query: 584 XTTCFSWSYYNIINRSKLKY 643
+ S+YNI K KY
Sbjct: 182 FSPSIGSSHYNITYWPKPKY 201
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 46.4 bits (105), Expect = 6e-04
Identities = 38/148 (25%), Positives = 53/148 (35%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 591 XXXAGAITILLTDRNLNTSFXDPAGGGD 674
L DR L+ F GG+
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGN 291
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 45.6 bits (103), Expect = 0.001
Identities = 39/192 (20%), Positives = 67/192 (34%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
RA+L +P S + Y + T H L+P +LG+ D+A+PR+
Sbjct: 55 RAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKMLGSRDLAYPRL 113
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
+ F + +G +YPPL+S + G + D + + IS+
Sbjct: 114 SAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWLLGITFVEISA 173
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
S D++P++ +TA +L +R
Sbjct: 174 IAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPPLILGSILLELERAFGL 233
Query: 645 SFXDPAGGGDPI 680
F A GGD +
Sbjct: 234 PFFQVAEGGDSL 245
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 45.6 bits (103), Expect = 0.001
Identities = 35/148 (23%), Positives = 54/148 (36%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
++PL+LG D+ FPR+N + ++ G YPPL+ G
Sbjct: 105 IIPLMLGTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGL 164
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
+D + IS+ S +++P+FV AV + +F
Sbjct: 165 GLDFYTTVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPP 224
Query: 597 XAGAITILLTDRNLNTSFXDPAGGGDPI 680
A +L DR F A GDPI
Sbjct: 225 LVIASLMLALDRMAGMHFF-TAASGDPI 251
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 45.2 bits (102), Expect = 0.001
Identities = 33/147 (22%), Positives = 55/147 (37%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
VD +S+ ++GI + F+++ +F+ +
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238
Query: 591 XXXAGAITILLTDRNLNTSFXDPAGGG 671
+ + DR L+T F GG
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGG 265
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 45.2 bits (102), Expect = 0.001
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +2
Query: 548 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYII 649
M C +YS +TC WSYYN IN SKLKYI+
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYIL 117
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 44.8 bits (101), Expect = 0.002
Identities = 37/176 (21%), Positives = 59/176 (33%), Gaps = 3/176 (1%)
Frame = +3
Query: 147 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 326
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 327 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 497
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 498 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDPAG 665
+F +LP+ + + ITA + + DR T F P+G
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSG 265
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 44.4 bits (100), Expect = 0.003
Identities = 41/196 (20%), Positives = 68/196 (34%), Gaps = 4/196 (2%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L PG + + +N + T HA N +PL++GA D+AFPR+
Sbjct: 55 RLQLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMIGARDVAFPRL 113
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAG----TG*TVYPPLSSNIAHRGRSVDLAIFSLHLA 452
N + ++ G G Y L+S G D L L
Sbjct: 114 NAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSVQFTSGLGPDFWTLGLLLL 173
Query: 453 GISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDR 632
GI + + ++P+FV +T+ A+ +L+ DR
Sbjct: 174 GIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAIIIFAFPSVTVALIMLMFDR 233
Query: 633 NLNTSFXDPAGGGDPI 680
+F + GG +
Sbjct: 234 TFAANFFEVLRGGSVV 249
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 44.0 bits (99), Expect = 0.003
Identities = 39/192 (20%), Positives = 62/192 (32%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L P + YN ++T HA N +PL LG D+A PR+
Sbjct: 58 RVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLIPLGLFGFGNYFLPLQLGVRDVALPRL 117
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
N G T Y PL+ + G SV + ++ L G+ S
Sbjct: 118 NTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYPLTMDGNQTGVSVFMV--AVILNGLGS 175
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
++P+F ++ T+ A + + L
Sbjct: 176 LLGSANFAATIVNLRAPGMGLWKMPVFAWSIFATSILQLLTLGGLTAAALLTYLEIKLGL 235
Query: 645 SFXDPAGGGDPI 680
S +P GG P+
Sbjct: 236 SMFNPGIGGVPV 247
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 43.6 bits (98), Expect = 0.005
Identities = 42/188 (22%), Positives = 69/188 (36%), Gaps = 5/188 (2%)
Frame = +3
Query: 117 GNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 296
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 297 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 461
F + +G +G T Y LS+ A G + ++ + +A I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S S ++P+ A IT+ A +L DR
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253
Query: 642 TSFXDPAG 665
TSF P+G
Sbjct: 254 TSFFIPSG 261
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 42.7 bits (96), Expect = 0.008
Identities = 42/193 (21%), Positives = 64/193 (33%), Gaps = 1/193 (0%)
Frame = +3
Query: 105 RAELGNP-GSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 281
R +L P L+G D YN I T H L+P +L A D+ FPR
Sbjct: 65 RTQLAVPENDLVGQD-FYNQIFTVHGTTMMFLFAVPVVEALGVM-LLPQMLAARDLPFPR 122
Query: 282 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 461
++ + G +YPPL+ G + D + + IS
Sbjct: 123 LSAFAIWAYIVGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGDNADFWLLGIGFIEIS 182
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
+ S ++P+F A+ I A A +L +R+
Sbjct: 183 AIAGAIEIIVGTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIAFPAVILATMLLEIERSFG 242
Query: 642 TSFXDPAGGGDPI 680
F GGDP+
Sbjct: 243 WPFFTAERGGDPL 255
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 42.7 bits (96), Expect = 0.008
Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 1/151 (0%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 407
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 408 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 587
G +L +L L+G+SS + ++PLFV TA
Sbjct: 139 YGLGTNLIQIALILSGLSS--TLTGVNFVMTITKMKKVPYLKMPLFVWGFFTTAILMIIA 196
Query: 588 XXXXAGAITILLTDRNLNTSFXDPAGGGDPI 680
+ +R T F D A GG P+
Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFDSALGGSPV 227
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 42.3 bits (95), Expect = 0.011
Identities = 37/146 (25%), Positives = 53/146 (36%), Gaps = 1/146 (0%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 413
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 414 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 593
D A ++ L GI + LPLFV AV A
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230
Query: 594 XXAGAITILLTDRNLNTSFXDPAGGG 671
G +LL ++ S+ GG
Sbjct: 231 EITGLFFLLLVGNLMHASYYISNYGG 256
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 41.1 bits (92), Expect = 0.024
Identities = 38/184 (20%), Positives = 64/184 (34%), Gaps = 2/184 (1%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R EL + G+ + YN V+ H N LVPL +GA D+AFPR+
Sbjct: 48 RLELISSGADLLGSMGYNQAVSTHGLLMVFWFISPFAFGFA-NYLVPLQIGADDLAFPRL 106
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS--SNIAHRGRSVDLAIFSLHLAGI 458
N + + G T+Y PL+ + I G + +L +
Sbjct: 107 NALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAYIPGEGLGATSVVLALIMFTA 166
Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 638
+ +P+F ++ +T + A+ IL +D L
Sbjct: 167 AVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMMLFAFAALLAALMILASDHIL 226
Query: 639 NTSF 650
T++
Sbjct: 227 GTTY 230
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 40.3 bits (90), Expect = 0.042
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +3
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 591 XXXAGAITILLTDRNLNT 644
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
Score = 33.1 bits (72), Expect = 6.4
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHA 179
R EL GS++ +QIYNT+VT+HA
Sbjct: 22 RLELETCGSVLRSEQIYNTLVTSHA 46
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 38.3 bits (85), Expect = 0.17
Identities = 36/192 (18%), Positives = 63/192 (32%)
Frame = +3
Query: 105 RAELGNPGSLIGXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R +L PG+ +N T H L+P +LGA D+ FPR+
Sbjct: 83 RVQLAVPGNDFLSADRFNQFFTMHGSAMMFLFAVPMFEAISII-LLPALLGARDLPFPRL 141
Query: 285 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
+ + + + +G +YPPL++ G D+ + L ++S
Sbjct: 142 SAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGLGSDIWLLGLSFIEVAS 199
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ +PL+ V + + +R +
Sbjct: 200 IAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPPLIAGDLLFEMERGFDW 259
Query: 645 SFXDPAGGGDPI 680
F DP GGDP+
Sbjct: 260 PFFDPERGGDPL 271
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 37.9 bits (84), Expect = 0.23
Identities = 31/148 (20%), Positives = 53/148 (35%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
L+P +LGA D+ FPR++ F V G + PPL++ G
Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
+ D + + IS+ + ++P+F A+ + A
Sbjct: 227 NADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPA 286
Query: 597 XAGAITILLTDRNLNTSFXDPAGGGDPI 680
A +L +R + F GGDP+
Sbjct: 287 VILATALLELERAFHWPFFAAHLGGDPL 314
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 37.5 bits (83), Expect = 0.30
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Frame = +3
Query: 366 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 536
G T P SSNI + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 537 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDPAGGGDPI 680
P ++ +T A+ ++ DR+ T+F + A GGDPI
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPI 390
Score = 36.7 bits (81), Expect = 0.52
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 105 RAELGNPGSLI--GXDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
R EL +P S G Y +VTAH N L+P +G+ D+A+P
Sbjct: 86 RMELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYP 145
Query: 279 RINNIRF 299
R+N+I F
Sbjct: 146 RLNSIGF 152
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 37.1 bits (82), Expect = 0.40
Identities = 21/51 (41%), Positives = 26/51 (50%)
Frame = +3
Query: 528 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFXDPAGGGDPI 680
DQ+ LF ++ IT AG IT+LL+DRN N F GG PI
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPI 62
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 35.9 bits (79), Expect = 0.91
Identities = 31/148 (20%), Positives = 52/148 (35%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 591 XXXAGAITILLTDRNLNTSFXDPAGGGD 674
A+ +L DR L T F GG+
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGN 290
>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1420
Score = 32.7 bits (71), Expect = 8.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 631 RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 509
+++NN +I S NNN N++ T TN + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,843,344
Number of Sequences: 1657284
Number of extensions: 7244319
Number of successful extensions: 16557
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 15154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16343
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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