Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J08
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    27   2.1  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    26   6.5  
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo...    25   8.6  

>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 633 EFWKIVKNSGV*PVAFNFDISSIFGSSGRVGKLILFPTCVVL 508
           +FWK +KN+       NF   SIF ++G  G L  FP+   L
Sbjct: 66  DFWKAIKNAKN-ASDINFSDYSIFFAAGGHGTLFDFPSATNL 106


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 607 GVFDNFPKLNLWSCAIKCIFDFKYWNC 687
           G    F K+  +     C+F F YW C
Sbjct: 110 GQMSQFQKVMSYFPPTACLFSFDYWGC 136


>SPAC1399.04c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 583 IECNRLYTGVFDNFPKLNLWSCAI 654
           I CN   T VF  FPKL + + +I
Sbjct: 172 IACNEGITNVFAKFPKLRMVTASI 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,597
Number of Sequences: 5004
Number of extensions: 54141
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)