Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J08
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)                  32   0.56 
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)           29   3.0  
SB_36236| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_7866| Best HMM Match : Trp_repressor (HMM E-Value=7.3)              29   4.0  
SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_17380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_5817| Best HMM Match : DpmII (HMM E-Value=1.5)                      28   9.1  
SB_14708| Best HMM Match : IF-2B (HMM E-Value=0)                       28   9.1  

>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
          Length = 900

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 514 DTSRKQDKLSDAPRASEYAAYIKIECNRLYTGVFDNFPKLNL 639
           ++SR        P ++ Y  Y++IE NR  TGVF+N  K+ L
Sbjct: 789 NSSRGTGVAGHNPSSAWYDEYLRIEQNRRLTGVFENQKKMPL 830


>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
          Length = 506

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 559 KLWARRKAYLVSDLCRIIVSAYFASIDSYNLNTRYRMG 446
           +L +  K+Y ++  CR++   Y  S+D+Y +   Y +G
Sbjct: 452 RLSSGEKSYYITKYCRLVTPTYIYSLDNY-MEIEYHIG 488


>SB_36236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 529 QDKLSDAPRASEYAAYIKIECNRLYTGVFDNFPKL 633
           Q K  D    S   +Y +IECN +  G  +NF K+
Sbjct: 86  QGKCKDNVTVSHNQSYQQIECNPIVPGEIENFQKI 120


>SB_7866| Best HMM Match : Trp_repressor (HMM E-Value=7.3)
          Length = 154

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 529 QDKLSDAPRASEYAAYIKIECNRLYTGVFDNFPKL 633
           Q K  D    S   +Y +IECN +  G  +NF K+
Sbjct: 24  QGKCKDNVTVSHNQSYQQIECNPIVPGEIENFQKI 58


>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +2

Query: 326 NKGSTSTENFQEFLFQKRDYFNFDSAKSEETIRFVTSYDYAHPIPRVKIIRVNGREIC 499
           N+   S +    F  ++ DY+N       +T+  +T+Y+Y HPI   K  R   R IC
Sbjct: 59  NQTLDSLQTKTHFYEEQIDYYN---QYIRDTLAGITTYNYNHPIHLYK--RKGNRRIC 111


>SB_17380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 214 GXLVSEILRTRRRQCCLYSLRRHSQNQR 131
           G ++  +LRT R  C     R H QNQ+
Sbjct: 460 GYIILSVLRTLRALCICVGFRAHHQNQK 487


>SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1173

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 282 GFTSH*IAKLMCL-PATKDLPRPKTFKNSYSRKEIISILIVQRVKKL 419
           G TS  +AKL+ L PAT  L + K   +  + + +IS+ +VQR   L
Sbjct: 781 GKTSEALAKLLSLQPATAMLVKLKPGSHQITEETVISVDLVQRADVL 827


>SB_5817| Best HMM Match : DpmII (HMM E-Value=1.5)
          Length = 529

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +2

Query: 326 NKGSTSTENFQEFLFQKRDYFNFDSAKSEETIRFVTSYDYAHPIPRVKII 475
           N  S S +NF E   ++RD  N +++K +E +    SY  A+ + R ++I
Sbjct: 2   NNDSQSVKNFLETASKQRDAKNQETSKRQEVLE---SYCSANDVLRAEVI 48


>SB_14708| Best HMM Match : IF-2B (HMM E-Value=0)
          Length = 350

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +2

Query: 188 PEYFTYEXSPSTPDRWHGVLVLPPEIVEDYLWIYVALNRKADVFASNKGSTSTENFQEFL 367
           P   TYE    T D W  +  +        + I  AL+  A++++  K   S+E   EF+
Sbjct: 22  PHESTYEVVSDTEDGWKAIREMKVRGAPA-IAIVGALSLAAEIYS--KPFASSEELAEFV 78

Query: 368 FQKRDYFN 391
            QK  Y N
Sbjct: 79  KQKLQYLN 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,521,376
Number of Sequences: 59808
Number of extensions: 405928
Number of successful extensions: 978
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)