Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J08
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64295.1 68414.m07286 F-box family protein-related contains T...    29   3.2  
At5g60700.1 68418.m07617 glycosyltransferase family protein 2 co...    29   4.3  
At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative...    29   4.3  
At2g17270.1 68415.m01995 mitochondrial substrate carrier family ...    28   7.5  

>At1g64295.1 68414.m07286 F-box family protein-related contains
           TIGRFAM TIGR01640 : F-box protein interaction domain
          Length = 324

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +3

Query: 309 LMCLPATKDLPRPKTFKNSYSRKEIISILIVQRVKKL*GLLHLTIMPIRYRVLRL*ESMD 488
           L+C   T+ +P     K +  + +II    V+   K  GL    + P RY++ RL +S D
Sbjct: 105 LLCYNDTRPIPEYIVCKPTTKQYQIIPNPKVRSCDKSLGLTVTGLQPFRYKIFRLSKSPD 164


>At5g60700.1 68418.m07617 glycosyltransferase family protein 2
           contains Pfam profile PF00535: glycosyl transferase,
           group 2 family protein
          Length = 668

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 386 FNFDSAKSEETIRFVTSYDYAH 451
           FN DS   EETI  V+++D+ H
Sbjct: 369 FNMDSKVDEETINVVSTFDWPH 390


>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
           (UBP1) similar to GI:11993461
          Length = 1083

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 374 KRDYFNFDSAKSEETIRFVTSYDYAHPIPRVKIIRVNGREICRDDNTTQVG 526
           K+DYF+F S   E  IR    +    P+ + ++     +  C DD T   G
Sbjct: 556 KKDYFDFSSFLDEPEIREGPVF---RPLSKSEVYEAGFKADCSDDKTVSAG 603


>At2g17270.1 68415.m01995 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 309

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 558 SSGRVGKLILFPTCVVLSSLHISRPLTLIILTRGIGW 448
           ++G VG +I  P  VVLSSL+ ++   ++   R IG+
Sbjct: 221 TAGAVGTIISNPADVVLSSLYNNKAKNVLQAVRNIGF 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,154,353
Number of Sequences: 28952
Number of extensions: 273561
Number of successful extensions: 714
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)