Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J07
(731 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 318 2e-87
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 312 1e-85
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 312 1e-85
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 312 1e-85
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 312 1e-85
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 310 5e-85
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 71 8e-13
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 30 1.8
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 29 3.2
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 29 3.2
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 4.2
At3g01450.1 68416.m00069 expressed protein 29 4.2
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.6
At5g56440.1 68418.m07045 F-box family protein contains F-box dom... 28 5.6
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 28 7.3
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 7.3
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 318 bits (782), Expect = 2e-87
Identities = 142/183 (77%), Positives = 166/183 (90%)
Frame = +3
Query: 183 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 362
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQ
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100
Query: 363 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 542
TRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIG 160
Query: 543 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPXKLLXMAGVQDCYTSXRGSTGTLGN 722
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A P K+L AG+ D +TS RGST TLGN
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 220
Query: 723 FAK 731
F K
Sbjct: 221 FVK 223
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 312 bits (767), Expect = 1e-85
Identities = 142/183 (77%), Positives = 162/183 (88%)
Frame = +3
Query: 183 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 362
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 363 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 542
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 543 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPXKLLXMAGVQDCYTSXRGSTGTLGN 722
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A P K+L AG+ D +TS RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 723 FAK 731
F K
Sbjct: 229 FVK 231
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 312 bits (767), Expect = 1e-85
Identities = 142/183 (77%), Positives = 162/183 (88%)
Frame = +3
Query: 183 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 362
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 363 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 542
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 543 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPXKLLXMAGVQDCYTSXRGSTGTLGN 722
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A P K+L AG+ D +TS RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 723 FAK 731
F K
Sbjct: 229 FVK 231
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 312 bits (767), Expect = 1e-85
Identities = 142/183 (77%), Positives = 162/183 (88%)
Frame = +3
Query: 183 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 362
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 363 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 542
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 543 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPXKLLXMAGVQDCYTSXRGSTGTLGN 722
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A P K+L AG+ D +TS RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 723 FAK 731
F K
Sbjct: 229 FVK 231
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 312 bits (767), Expect = 1e-85
Identities = 142/183 (77%), Positives = 162/183 (88%)
Frame = +3
Query: 183 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 362
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 363 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 542
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 543 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPXKLLXMAGVQDCYTSXRGSTGTLGN 722
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A P K+L AG+ D +TS RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 723 FAK 731
F K
Sbjct: 229 FVK 231
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 310 bits (762), Expect = 5e-85
Identities = 140/183 (76%), Positives = 162/183 (88%)
Frame = +3
Query: 183 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 362
++++WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109
Query: 363 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 542
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169
Query: 543 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPXKLLXMAGVQDCYTSXRGSTGTLGN 722
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A P K+L AG+ D +TS RGST TLGN
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229
Query: 723 FAK 731
F K
Sbjct: 230 FVK 232
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 70.9 bits (166), Expect = 8e-13
Identities = 40/132 (30%), Positives = 70/132 (53%)
Frame = +3
Query: 327 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 506
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 507 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPXKLLXMAGVQDCY 686
V + K T P + G G+ V L PA GTG+++ +L MAGV++
Sbjct: 209 QV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 261
Query: 687 TSXRGSTGTLGN 722
GS L N
Sbjct: 262 GKQLGSNNALNN 273
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 29.9 bits (64), Expect = 1.8
Identities = 28/124 (22%), Positives = 53/124 (42%)
Frame = +3
Query: 333 VLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPV 512
V+ + V K T+ G+ R+ A + G+ G IG ++ +A++ A ++ V
Sbjct: 362 VIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAMQKAYEKCFQNLHYV 421
Query: 513 RRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPXKLLXMAGVQDCYTS 692
R + HT+ + + L PAP TG+ + +L +AG ++ +
Sbjct: 422 ERH-------EEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSK 474
Query: 693 XRGS 704
GS
Sbjct: 475 VIGS 478
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 489 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPXKLLXMA 668
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 669 GVQ 677
GV+
Sbjct: 257 GVE 259
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 489 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPXKLLXMA 668
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 669 GVQ 677
GV+
Sbjct: 257 GVE 259
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 535 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 356
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 355 CTGMIFRTSSFR 320
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -2
Query: 556 TVCGFPILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 377
T+ +LL Q L++ + A + VA + H +P + P L P N R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217
Query: 376 CPARVCF 356
A CF
Sbjct: 218 AKASTCF 224
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 393 AFVAIGDNNGHIGLGVKCSKE 455
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At5g56440.1 68418.m07045 F-box family protein contains F-box domain
Pfam:PF00646
Length = 430
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 596 PADSCPSWYWNCVCAXS*XASSXGWCTGLLH 688
P DSCP +N + + S S GWC +L+
Sbjct: 282 PLDSCPIGVFNQLVSLSLCTCSLGWCRLILN 312
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1
Query: 25 LSSPIVQQWRTLLQP 69
+S+PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 549 HTVPCKVTGKCGSVTVRL 602
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,252,535
Number of Sequences: 28952
Number of extensions: 316543
Number of successful extensions: 843
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -