Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J06
(631 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 344 1e-93
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 238 7e-62
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 229 3e-59
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 202 4e-51
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 194 1e-48
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 192 4e-48
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 173 3e-42
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 163 4e-39
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 138 1e-31
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 135 7e-31
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 124 1e-27
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 124 2e-27
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 122 9e-27
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 118 2e-25
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 117 2e-25
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 117 2e-25
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 116 6e-25
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 114 2e-24
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 111 1e-23
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 108 9e-23
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 100 2e-20
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 100 2e-20
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 96 5e-19
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 93 4e-18
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 89 6e-17
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 88 2e-16
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 87 3e-16
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 86 8e-16
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 85 2e-15
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 84 3e-15
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 82 9e-15
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 69 7e-11
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 66 5e-10
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 66 7e-10
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 66 9e-10
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 65 1e-09
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 62 1e-08
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 60 4e-08
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 56 7e-07
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 56 9e-07
UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 53 5e-06
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 53 5e-06
UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponem... 50 6e-05
UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10; Chlorob... 48 1e-04
UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellula... 48 2e-04
UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197; Bacter... 47 3e-04
UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5; Thermoto... 46 6e-04
UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3; Planctom... 46 0.001
UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n... 44 0.002
UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3; n... 44 0.004
UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39; Bacteri... 43 0.005
UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1; ... 42 0.016
UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27; Bacteri... 42 0.016
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 42 0.016
UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3; Entomopl... 42 0.016
UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94; Bacteri... 42 0.016
UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplas... 41 0.021
UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18; Bacteri... 40 0.037
UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellul... 38 0.15
UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 38 0.15
UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4; Leptospi... 38 0.26
UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592, ... 36 0.61
UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.61
UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163; Firmic... 36 0.61
UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1; ... 35 1.9
UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1; ... 35 1.9
UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas palustris|... 29 2.2
UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 2.4
UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus carot... 33 5.7
UniRef50_Q7SDC7 Cluster: Predicted protein; n=2; Neurospora cras... 33 5.7
UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin... 33 7.5
UniRef50_A7I6D9 Cluster: Multi-sensor signal transduction histid... 33 7.5
UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8; Euteleos... 33 7.5
UniRef50_Q225J0 Cluster: Putative uncharacterized protein; n=1; ... 32 9.9
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 344 bits (845), Expect = 1e-93
Identities = 170/197 (86%), Positives = 180/197 (91%)
Frame = +3
Query: 39 MAVXNLSNQXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 218
MAV +S + KFV G+FKA LN FLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VL
Sbjct: 1 MAV-QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL 59
Query: 219 GEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 398
GEKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRAC
Sbjct: 60 GEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRAC 119
Query: 399 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQ 578
YGVLRFIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQ
Sbjct: 120 YGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQ 179
Query: 579 GVLGIKVKIMLPWDXQG 629
GVLGIKVKIMLPWD G
Sbjct: 180 GVLGIKVKIMLPWDPTG 196
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 238 bits (583), Expect = 7e-62
Identities = 114/185 (61%), Positives = 140/185 (75%)
Frame = +3
Query: 54 LSNQXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 233
LS + K V GVF A LN F TRELAE GY+GVEVR TP + E+I+ A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 234 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 413
RI ELTS++ KRF + + + +YAE+V RGL A QAE+L+ KL+ GL +RRA YGVLR
Sbjct: 66 RIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLR 125
Query: 414 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 593
F M +GA+G EVV+SGKLR RAKS K+ DG MIHSG P D+++ A RHVL+RQGVLGI
Sbjct: 126 FAMGAGAKGVEVVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVLMRQGVLGI 185
Query: 594 KVKIM 608
KVKIM
Sbjct: 186 KVKIM 190
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 229 bits (561), Expect = 3e-59
Identities = 111/187 (59%), Positives = 142/187 (75%)
Frame = +3
Query: 54 LSNQXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 233
LS + V GVF A L FL RELA+DG++GVE RVTP R+EI+I +T+T+ VLGEKGR
Sbjct: 56 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 115
Query: 234 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 413
RIRELT+ +Q+RFN E ++L+AE+V RGL A+AQAESLR+KL+ L VRRA G++R
Sbjct: 116 RIRELTACLQQRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 175
Query: 414 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 593
++MESGA+GCEV + GK++GQRAKSM F DG MI SG +V+TATRH LR G +G+
Sbjct: 176 YVMESGAKGCEVTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRHCHLRAGTIGV 235
Query: 594 KVKIMLP 614
VKIM P
Sbjct: 236 NVKIMRP 242
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 202 bits (494), Expect = 4e-51
Identities = 87/189 (46%), Positives = 137/189 (72%)
Frame = +3
Query: 54 LSNQXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 233
++ + KFV GVF A L+ F ++ L + GY+G+EVR TP ++EI I AT+ Q V+G +G+
Sbjct: 18 INKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGK 77
Query: 234 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 413
+ +ELT +QKRF + ++++AE + +GLCA AQ E++ YKL+ + VR A +++
Sbjct: 78 KHKELTQFLQKRFGYSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIK 137
Query: 414 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 593
+++ GA+GCE+++SGKL+ QRAK+MKF G MI +G P NDY++ A RHV +QG++G+
Sbjct: 138 SVIQDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQPKNDYIDVAVRHVFFKQGIMGV 197
Query: 594 KVKIMLPWD 620
KVKIMLP++
Sbjct: 198 KVKIMLPYE 206
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 194 bits (474), Expect = 1e-48
Identities = 114/195 (58%), Positives = 130/195 (66%)
Frame = +3
Query: 45 VXNLSNQXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 224
V +S + KF GVF A LN LTREL E+GYSG EVRVTP+ +EIII AT+T +VLGE
Sbjct: 2 VTQMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGE 61
Query: 225 KGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYG 404
KG++I+ELTSVVQKRF E SVEL AEKV RG AIAQAESLRYKL+GGLA+
Sbjct: 62 KGKKIKELTSVVQKRFEFLENSVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM------ 115
Query: 405 VLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGV 584
L QRAKSMKF DG +I SG P DY++ A RHV LRQGV
Sbjct: 116 --------------------LCAQRAKSMKFKDGYLISSGQPVKDYIDLAVRHV-LRQGV 154
Query: 585 LGIKVKIMLPWDXQG 629
LGIKVKIM WD +G
Sbjct: 155 LGIKVKIMFNWDPKG 169
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 192 bits (469), Expect = 4e-48
Identities = 87/187 (46%), Positives = 127/187 (67%)
Frame = +3
Query: 69 KFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 248
+ + G+F A LN LTREL ++GY G EVR TP R+EIII A T+ + GRR++E+
Sbjct: 11 RIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFVDNHGRRLQEV 70
Query: 249 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 428
++QKR+ + E S+E++ +++ +GL A+ Q ESLRYKLI + RRA Y ++RF+M++
Sbjct: 71 RMMIQKRWRLKEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAAYSIIRFVMDA 130
Query: 429 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 608
GARGCEV +SGKLRG RA + K+ +G M+ SGD +V A H+ ++Q +GI+V IM
Sbjct: 131 GARGCEVAISGKLRGARASTSKYKEGYMVKSGDVTKQFVTQAVGHIPMKQATIGIRVLIM 190
Query: 609 LPWDXQG 629
L D G
Sbjct: 191 LAQDPSG 197
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 173 bits (421), Expect = 3e-42
Identities = 79/187 (42%), Positives = 123/187 (65%)
Frame = +3
Query: 69 KFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 248
+F+ G+ A L F + L +G+S +E+R+ +II+ + +GEK R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 249 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 428
+ +R +P++SVE+ EKV +GLCA+ QA +R K++GG+ RRA L+ +
Sbjct: 81 QHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHA 140
Query: 429 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 608
A+GC+++VSGKL+GQRAKS+KF DG++IHSGD DY+NT V +QGV+GI+V+IM
Sbjct: 141 KAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIM 200
Query: 609 LPWDXQG 629
LP+D +G
Sbjct: 201 LPYDPEG 207
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 163 bits (395), Expect = 4e-39
Identities = 89/150 (59%), Positives = 105/150 (70%)
Frame = +3
Query: 180 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 359
EIII AT+TQ+VLG+KGR+IRELTSVVQKRF E +VELYAEK R AIAQAESLR
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLR 160
Query: 360 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 539
+KL+GGL VRRA YGVL F+MESG +GCEV+ +I SG P D
Sbjct: 161 FKLLGGLVVRRAGYGVLSFVMESGTKGCEVI----------------GWYIISSGQPVKD 204
Query: 540 YVNTATRHVLLRQGVLGIKVKIMLPWDXQG 629
Y+N+ RHVLL+QGVL IKVKI++ QG
Sbjct: 205 YINSVVRHVLLKQGVLSIKVKIIVRLGSQG 234
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 138 bits (334), Expect = 1e-31
Identities = 72/181 (39%), Positives = 108/181 (59%)
Frame = +3
Query: 72 FVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 251
F+ V + ++ FL +EL GY G++++ TP+ +++II A V+G GRRIRELT
Sbjct: 7 FIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELT 66
Query: 252 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 431
+++K+F + +E+ E++ L A QA L L G+ RRA Y LR IM +G
Sbjct: 67 RILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNG 124
Query: 432 ARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 611
ARG E+ +SGKL G+RAKS++F G + G+P V+ LL+ GV+G+KV IM
Sbjct: 125 ARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIMP 184
Query: 612 P 614
P
Sbjct: 185 P 185
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 135 bits (327), Expect = 7e-31
Identities = 65/182 (35%), Positives = 110/182 (60%)
Frame = +3
Query: 69 KFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 248
K++ + +A L+ F +REL + GY+ + T +II + V+G+ R+ ++
Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKI 75
Query: 249 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 428
++ RF ++ ++ +K+ RGL A ++LR KL + +RRA Y ++R M +
Sbjct: 76 EYLLAGRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRA 135
Query: 429 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 608
GA GCEV+V+GKLR QRA++ KF +G +I +G P ++ ATRH+ +RQGV+G+KV+I
Sbjct: 136 GAAGCEVIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHIKMRQGVIGVKVRIY 195
Query: 609 LP 614
P
Sbjct: 196 NP 197
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 124 bits (300), Expect = 1e-27
Identities = 58/82 (70%), Positives = 68/82 (82%)
Frame = +3
Query: 384 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 563
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF DG MI SG+P DY+ + TRH
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTRH 89
Query: 564 VLLRQGVLGIKVKIMLPWDXQG 629
LLRQG +G++VKIML D +G
Sbjct: 90 ALLRQGTIGMRVKIMLDHDPKG 111
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 124 bits (299), Expect = 2e-27
Identities = 65/184 (35%), Positives = 107/184 (58%)
Frame = +3
Query: 63 QXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 242
+ KFV G KA ++ + +L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 243 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 422
+LT V ++++ ++ A++V L A A L + G R+A + LR +M
Sbjct: 64 KLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVM 121
Query: 423 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 602
+GA GCEVV+SGKL G R++ KFVDG + HSG+P + V+ + + G LG KV+
Sbjct: 122 NAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVR 181
Query: 603 IMLP 614
I+ P
Sbjct: 182 IIQP 185
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 122 bits (293), Expect = 9e-27
Identities = 64/184 (34%), Positives = 104/184 (56%)
Frame = +3
Query: 63 QXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 242
+ KF+ GV + FLT+EL GY G+++ TP+ +++ I A + V+G+ G+++R
Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63
Query: 243 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 422
+LT + ++I VE+ ++V A AE L L G R+A +R IM
Sbjct: 64 QLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIM 121
Query: 423 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 602
ESGA GCEV+V+GKL G R+++ KF +G + H G+P V + + G +G++VK
Sbjct: 122 ESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVK 181
Query: 603 IMLP 614
I+ P
Sbjct: 182 IVPP 185
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 118 bits (283), Expect = 2e-25
Identities = 57/181 (31%), Positives = 101/181 (55%)
Frame = +3
Query: 72 FVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 251
FVG V + ++ + +L GYS ++ + TPI + I + A + V+G KG+ ++ELT
Sbjct: 6 FVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKELT 65
Query: 252 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 431
+ +++ +E+ ++V L + L G+ R+ + +R +M SG
Sbjct: 66 ETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSG 123
Query: 432 ARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 611
A+G ++VSGKL G+R+++ KF+DG M H G+P VN + + L+ G++G+ VKIM
Sbjct: 124 AKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVKIMR 183
Query: 612 P 614
P
Sbjct: 184 P 184
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 117 bits (282), Expect = 2e-25
Identities = 62/181 (34%), Positives = 103/181 (56%)
Frame = +3
Query: 72 FVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 251
FV G+ + ++ +L +EL GY G++V+VTP+ + +++ A R V+G G+ +R +T
Sbjct: 6 FVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAIT 65
Query: 252 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 431
++ +F++ VE+ ++V L A + L G+ RR Y +R IM +G
Sbjct: 66 QKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAG 123
Query: 432 ARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 611
A+G EV +SGK+RG R+ + KF DG + G+P +V V L+ GVLG+ V+IM
Sbjct: 124 AQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVRIMP 183
Query: 612 P 614
P
Sbjct: 184 P 184
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 117 bits (282), Expect = 2e-25
Identities = 59/187 (31%), Positives = 113/187 (60%)
Frame = +3
Query: 54 LSNQXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 233
++++ +F+ G+ + ++ F EL GY G++V TP+ ++I++ A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 234 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 413
IR++T+ ++ RFN+ + V++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 414 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 593
IMESGA G E+V+SGK+ G R++ KF G + H+G+P + V++ +++ G +G+
Sbjct: 119 RIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGV 178
Query: 594 KVKIMLP 614
+VKI+ P
Sbjct: 179 RVKIIPP 185
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 116 bits (278), Expect = 6e-25
Identities = 64/193 (33%), Positives = 106/193 (54%)
Frame = +3
Query: 36 IMAVXNLSNQXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 215
+M N+ KFV G+ K L+ +L EL GY G+ ++ P ++II R
Sbjct: 2 VMYGENVPVHKKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIA 61
Query: 216 LGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 395
+G +GR IR + VQ+RF + + V + +++ + L A L L G+ RRA
Sbjct: 62 IGRRGRNIRRVEEEVQERFPLLGR-VSIEVKELPSPELNPRVVARRLASALERGIHFRRA 120
Query: 396 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 575
YG LR IM +GA+G +++SGKL G RA++ KF++G + + G+P ++Y+ + +
Sbjct: 121 AYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTK 180
Query: 576 QGVLGIKVKIMLP 614
G +G+ V+IM P
Sbjct: 181 PGAIGVTVRIMPP 193
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 114 bits (274), Expect = 2e-24
Identities = 64/182 (35%), Positives = 100/182 (54%)
Frame = +3
Query: 69 KFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 248
K + G+ LN +L R+L Y + TPI +++I+ A V+G KG I+ +
Sbjct: 7 KVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKAI 66
Query: 249 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 428
V+++ F I +++ +V + L A A + L+ G+ RRA L IM +
Sbjct: 67 AEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAA 124
Query: 429 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 608
GARG E+V+SGKL QR ++ KF G + SG+P + V+ A HVLL+ G+ G+KV+IM
Sbjct: 125 GARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVRIM 184
Query: 609 LP 614
P
Sbjct: 185 KP 186
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 111 bits (267), Expect = 1e-23
Identities = 67/189 (35%), Positives = 107/189 (56%)
Frame = +3
Query: 39 MAVXNLSNQXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 218
M+V + + F+ + + ++ +L + GYS VE++ TP+ + +II A R+ +++
Sbjct: 1 MSVAKKNIKKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAII 60
Query: 219 GEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 398
G +G+ I+++T V+++ F IP V + KV L A A L L G RRA
Sbjct: 61 GRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAA 118
Query: 399 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQ 578
Y LR IM +GA G +V VSGKLRG+RA+ K++ G + SG+ + A HVLL+
Sbjct: 119 YTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKV 178
Query: 579 GVLGIKVKI 605
GV G++V I
Sbjct: 179 GVEGVEVII 187
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 108 bits (260), Expect = 9e-23
Identities = 64/184 (34%), Positives = 100/184 (54%)
Frame = +3
Query: 63 QXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 242
+ KFV + K + ++ E+ G+ GV++ TP+ +++ + R V+G+ GRRI+
Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIK 63
Query: 243 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 422
LT + K F I V + ++V A A L L G RRA Y L IM
Sbjct: 64 ALTEKL-KDFGIENPQVSV--DEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIM 120
Query: 423 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 602
E+GA+GCE+ +SGKL +RA++ KFV G ++H+GDP V + + GVLG+ V+
Sbjct: 121 EAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVSVR 180
Query: 603 IMLP 614
I+ P
Sbjct: 181 IIPP 184
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 100 bits (240), Expect = 2e-20
Identities = 56/181 (30%), Positives = 93/181 (51%)
Frame = +3
Query: 72 FVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 251
F+ + K ++ +L ++ Y+GVEV TPI + +II A R ++G GR I++L
Sbjct: 8 FLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLA 67
Query: 252 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 431
+ +K F + + + V L A A L L G RRA + +R IM +G
Sbjct: 68 QIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAG 125
Query: 432 ARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 611
A G E+++SGKL +RA+ K +G++ SG ++ A +L+ G+ G++V I
Sbjct: 126 ALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVVITK 185
Query: 612 P 614
P
Sbjct: 186 P 186
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 100 bits (240), Expect = 2e-20
Identities = 60/181 (33%), Positives = 94/181 (51%)
Frame = +3
Query: 72 FVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 251
F+ K ++ +L ++ Y+GVE+ TPI + +II A R ++G+ G+ I++L
Sbjct: 8 FLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLA 67
Query: 252 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 431
V++K F + + + A + L A A L L G RRA + +R IM SG
Sbjct: 68 QVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSG 125
Query: 432 ARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 611
A G EV+VSGKL +RAK K +G + SG ++ A +L+ GV G++V I
Sbjct: 126 AVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVEVVITK 185
Query: 612 P 614
P
Sbjct: 186 P 186
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 96.3 bits (229), Expect = 5e-19
Identities = 57/181 (31%), Positives = 95/181 (52%)
Frame = +3
Query: 72 FVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 251
F+ + K L+ FL + GY+G+E+ TP ++I A ++G G IR+L
Sbjct: 10 FIDYSLKKVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLM 69
Query: 252 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 431
+++Q F + ++V + V L A A + L + RR +LR +ME+G
Sbjct: 70 TIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAG 127
Query: 432 ARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 611
A G E+++SGKLR +RA+ K G + +GD + V+ A LL++GV G++V I+
Sbjct: 128 AVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVVIVR 187
Query: 612 P 614
P
Sbjct: 188 P 188
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 93.5 bits (222), Expect = 4e-18
Identities = 51/172 (29%), Positives = 91/172 (52%), Gaps = 1/172 (0%)
Frame = +3
Query: 93 KAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRF 272
K + FL L++ GY E+ TP+ + I+I A R ++G KG ++E+++++ +
Sbjct: 21 KWMIKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKL 80
Query: 273 NIPEQSVELY-AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEV 449
+ +++ K+ + A + + G+ RR + +R +ME+GA+G E+
Sbjct: 81 GVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEI 140
Query: 450 VVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 605
VVSGKL +RA+ K G + G + V A HVLL+ G+ GI+V+I
Sbjct: 141 VVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 89.4 bits (212), Expect = 6e-17
Identities = 48/184 (26%), Positives = 98/184 (53%)
Frame = +3
Query: 63 QXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 242
+ KF+ V + + ++ +E G+ + ++ TP + I + R V+G +G +++
Sbjct: 3 ERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKVQ 62
Query: 243 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 422
++T ++K++ I +E+ + V L A+ + L G + R+A L +
Sbjct: 63 QMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRTI 120
Query: 423 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 602
++GA+G + +SGK+ G+RA+ KF+ G + +SG+P + + T L+ G+LG+ VK
Sbjct: 121 QAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTVK 180
Query: 603 IMLP 614
I+ P
Sbjct: 181 ILNP 184
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 87.8 bits (208), Expect = 2e-16
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 1/169 (0%)
Frame = +3
Query: 102 LNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 281
L FL + + G+SGVEV P ++I + TR V+G KG IRELT ++K F++
Sbjct: 17 LREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDLK 76
Query: 282 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME-SGARGCEVVVS 458
V++ +++ T L + + G A RRA ++ IME A G ++ +S
Sbjct: 77 SPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITIS 134
Query: 459 GKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 605
GKLRG R+ K G++ +G + V HV G++GI+++I
Sbjct: 135 GKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIRI 183
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 87.0 bits (206), Expect = 3e-16
Identities = 42/66 (63%), Positives = 49/66 (74%)
Frame = +3
Query: 417 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 596
+ ESGA+G E +VSGKL+GQRAKS KFVD MIHS D N YV+T+ HVLLRQGVLG K
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQGVLGSK 139
Query: 597 VKIMLP 614
+ P
Sbjct: 140 CRSCFP 145
Score = 81.4 bits (192), Expect = 2e-14
Identities = 40/61 (65%), Positives = 47/61 (77%)
Frame = +3
Query: 45 VXNLSNQXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 224
V S + +FV G+F+A LN FLTRELAEDG S VEVRVTP + EIII+ TRTQ+VLGE
Sbjct: 2 VVQTSKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGE 61
Query: 225 K 227
K
Sbjct: 62 K 62
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 85.8 bits (203), Expect = 8e-16
Identities = 49/183 (26%), Positives = 93/183 (50%)
Frame = -3
Query: 608 HDFDLDS*YSLSEKHMSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGT 429
H+ D D+ +LS +H+S +V+ ++ ++RVDHE++ L G+ ++Q +N T T
Sbjct: 82 HNLDSDTQNTLSHQHVSDGNVNKVVGWLTRVDHETVRVLLRLGSSSSQFTGDDNLHTLST 141
Query: 428 RFHDETENTIASTTYSETSDKLVS*RFGLGDSAKATSSHLFSIQFYRLLWNVESLLYYGS 249
H ++++T+ +++ +T +L FGL S + + + +ESL G
Sbjct: 142 SSHGKSQHTVGGSSHWQTVQQLGFQGFGLDSSGQTSLLDSLGVDDNSFRRQLESLDNQGG 201
Query: 248 QLTDSASFLSEHTLCPGGHNNDLRADGSDPHFHAGVAVLGQLPSEEXIEXCLENPXSNKF 69
QL DS S S++TL G +N+L+ + GV + Q EE ++ +E+ S +
Sbjct: 202 QLVDSTSLFSQNTLGVGSLDNNLQLGWGLSDLNTGVTLFSQFSGEEFVQLGVEDTISYQL 261
Query: 68 XLI 60
+
Sbjct: 262 SFL 264
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 84.6 bits (200), Expect = 2e-15
Identities = 50/181 (27%), Positives = 89/181 (49%)
Frame = +3
Query: 72 FVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 251
F+ V + + +L RE G+ G+E TP +++ + A + V+G +G+ I EL
Sbjct: 11 FINRNVERHMVREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHELQ 70
Query: 252 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 431
++ F + +E+ ++ L A A L L G RRA + + IM++G
Sbjct: 71 YRLKSDFKLENPRLEV--NEIEEPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMDAG 128
Query: 432 ARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 611
ARGC +++SGK+ G R + KF G + G+ +++ + + G +G V+IM
Sbjct: 129 ARGCLIILSGKISGPRHRVQKFQQGHIKFCGETALQFMDEGFSTAVKKLGTVGCTVRIMR 188
Query: 612 P 614
P
Sbjct: 189 P 189
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 83.8 bits (198), Expect = 3e-15
Identities = 43/174 (24%), Positives = 91/174 (52%)
Frame = +3
Query: 93 KAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRF 272
K + +L L + Y ++ T + + I+I+A + ++G KG++++ L +++ +F
Sbjct: 12 KWMIKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKALADILKSKF 71
Query: 273 NIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVV 452
N+ +++ E +A + + G+ RRA LR + E+ +G EV+
Sbjct: 72 NLDNVVIDVIQEPHPEYNARLVALR--IADAMAKGIRFRRAAIIALRQLQEANVQGAEVI 129
Query: 453 VSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 614
+SGKL +R++ K+ G++I +G + V A VLL+ G+ ++V+++ P
Sbjct: 130 ISGKLTTERSRFEKYTTGIVIKAGQDALEKVQEAVIPVLLKPGIFSVRVRVLPP 183
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 82.2 bits (194), Expect = 9e-15
Identities = 37/52 (71%), Positives = 42/52 (80%)
Frame = +3
Query: 474 QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDXQG 629
QRAKSMKF DG M+ SG P +Y+++A RHVLLRQGVLGIKVKIML WD G
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPTG 53
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 69.3 bits (162), Expect = 7e-11
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +3
Query: 123 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 257
+++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK RRIREL V
Sbjct: 16 DISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 66.5 bits (155), Expect = 5e-10
Identities = 31/46 (67%), Positives = 38/46 (82%)
Frame = +3
Query: 123 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 260
++ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGRRIRELT V+
Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 66.1 bits (154), Expect = 7e-10
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +3
Query: 123 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 257
++ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGRRIRELT V
Sbjct: 406 DILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
Score = 42.7 bits (96), Expect = 0.007
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +3
Query: 123 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 218
++ EDGYS ++V+VT +R EIII ATRTQ+ L
Sbjct: 281 DIPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 65.7 bits (153), Expect = 9e-10
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Frame = +3
Query: 252 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKL-IGGLAVRRACYGVLRFIMES 428
+++ F I +++ + + + + Q+ ++ + R + LRF++ S
Sbjct: 112 NIISHLFFINSNKLKILYKNYKSSNISTMTQSSRMKEAFNYTNKSFRSIIFNTLRFLINS 171
Query: 429 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 608
G RGC + + G R +R K+ KF GL+ HSG ND++++ + ++ ++G LGI +KIM
Sbjct: 172 GVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDWIDSDSFYLNKKRGTLGINIKIM 231
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 65.3 bits (152), Expect = 1e-09
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 1/183 (0%)
Frame = +3
Query: 69 KFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 248
KF+ F+ L S V +R TPI + +II + R + + E R L
Sbjct: 8 KFIQNAKLTVFSQEFIRLYLRGANVSKVIIRQTPIVNRVIIYSARPKMISEE---RKAHL 64
Query: 249 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGL-AVRRACYGVLRFIME 425
+++ +F + + +E+ + L A AE L + + A RR L IM
Sbjct: 65 AKLLELKFGLEKPVIEVLP--IENPNLDAHVIAERLAMGIERNIRAYRRLAQRYLETIMN 122
Query: 426 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 605
+GA G E+V++G+L GQR K+ +F G + +G ++ A L+ GV GI V I
Sbjct: 123 AGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKTGTIGQFELDRAFNIAYLKPGVAGIHVTI 182
Query: 606 MLP 614
+ P
Sbjct: 183 LKP 185
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 61.7 bits (143), Expect = 1e-08
Identities = 45/170 (26%), Positives = 87/170 (51%), Gaps = 2/170 (1%)
Frame = +3
Query: 102 LNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 281
+ + ++LA G + +E+ + +II A + V+G+ G I+EL +++ +
Sbjct: 39 IRQLINKKLAAAGIARIEIERAGQQVNVIISAAKPGVVIGKGGESIKELRGDIERL--VS 96
Query: 282 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 461
+V + ++ + A A + ++ A RRA + +MESGARG +V++SG
Sbjct: 97 AGTVAVNVAEIPNPNISAPLVALRIAEQIERRFAFRRAMKQAAQRVMESGARGVKVILSG 156
Query: 462 KLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 605
+L G ++A++ K ++G + +H+ DY R G+LGIKV +
Sbjct: 157 RLGGAEQARTEKVLEGRVPLHTLRADIDYGTALAR---TTYGILGIKVLV 203
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 60.1 bits (139), Expect = 4e-08
Identities = 29/46 (63%), Positives = 35/46 (76%)
Frame = +3
Query: 51 NLSNQXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEII 188
++S + KFV GVF A LN F RELAE+GYSGVEVRVTP ++II
Sbjct: 84 DISKRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 56.0 bits (129), Expect = 7e-07
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 2/170 (1%)
Frame = +3
Query: 102 LNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 281
+ +L LA+ S + + I I R ++G+ G+ + +L +++ I
Sbjct: 38 IRQYLNARLAKASVSRIVIERALKLVTITICTARPGMIIGKAGQEVDKLKEELKR---IT 94
Query: 282 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 461
++ V++ ++ L A AE++ +L G +A RRA + M GA G ++ VSG
Sbjct: 95 KKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQVSG 154
Query: 462 KLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 605
+L G + A+S F +G +H+ DY A L + G+LGIKV I
Sbjct: 155 RLNGAEMARSEMFKEGRTPLHTLRADIDY---ALAEALTKVGLLGIKVWI 201
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 55.6 bits (128), Expect = 9e-07
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Frame = +3
Query: 183 IIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 362
+++ + + ++LG+ G I +LT +QK E + + + L AI AE +
Sbjct: 67 VLVHSAKPGAILGQNGENINKLTQDIQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAI 126
Query: 363 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDGLM-IHSGDPCN 536
KL R A +R M+SGA+G + VSG+L G A+S + +G M +H+
Sbjct: 127 KLENRAPFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSEGEMKLHTLRQDV 186
Query: 537 DYVNTATRHVLLRQGVLGIKV 599
D+ R G +G+KV
Sbjct: 187 DFAMATAR---TTYGAIGVKV 204
>UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter
sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp.
BAL39
Length = 281
Score = 53.2 bits (122), Expect = 5e-06
Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Frame = +3
Query: 102 LNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 281
+ +L+ +A+ G + V + T R + I R V+G+ G+ + ++ ++K +
Sbjct: 38 IRKYLSARIAKGGVAKVVIERTLKRITVTIHTARPGIVIGKAGQEVDKIKEELKK---LT 94
Query: 282 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 461
++ +++ ++ L A AE + +L ++ RRA + M GA G +++ SG
Sbjct: 95 KKEIQINIFEIKRPELDAQLVAEGVAKQLEARISFRRAMKSTIAATMRMGAEGIKIMTSG 154
Query: 462 KLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 605
+L G + A+S ++ +G + +H+ DY A L G +G+KV I
Sbjct: 155 RLGGAEMARSEQYKEGRIPLHTFRADIDY---ALAEALTTYGKIGVKVWI 201
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 53.2 bits (122), Expect = 5e-06
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +3
Query: 123 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 263
++ EDGYS ++V+VT + EIII AT+TQ+ L E GR++RELT V +
Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponema
pallidum|Rep: 30S ribosomal protein S3 - Treponema
pallidum
Length = 247
Score = 49.6 bits (113), Expect = 6e-05
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Frame = +3
Query: 150 VEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGL 329
VE+ P R +++ R V+G KG I ++ + VQKR N + V++ +++ L
Sbjct: 57 VEIVRHPQRVTVVMHTARPGVVIGAKGVNIEKIGAEVQKRLN---KKVQIKVKEIKRMEL 113
Query: 330 CAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 506
A A+++ +L ++ R+ M+SGA+G ++ VSG+L G + +++ + +G
Sbjct: 114 NAYLVAQNVARQLTARVSFRKCLRQACAGTMKSGAQGVKIRVSGRLGGAEMSRTEEIKEG 173
Query: 507 -LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 599
+H+ DY A H G +G+KV
Sbjct: 174 RTPLHTLRADIDY-GFAEAHT--TYGSIGVKV 202
>UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10;
Chlorobiaceae|Rep: 30S ribosomal protein S3 - Chlorobium
tepidum
Length = 253
Score = 48.4 bits (110), Expect = 1e-04
Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 2/173 (1%)
Frame = +3
Query: 87 VFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK 266
V + ++ L +E A G + + + T +I I A R +++G KG I L+ Q+
Sbjct: 38 VIRNYVHARLKKEKA--GIAKIVIERTTKHIKINIYAARPGAIVGHKGEEINNLS---QE 92
Query: 267 RFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCE 446
I + V++ +V + A E++ Y+L ++ RRA ++ M +GA G
Sbjct: 93 LTRITGKEVKIDVIEVIKPEIEAQLIGENIAYQLENRVSFRRAMKMAIQQAMRAGAEGVR 152
Query: 447 VVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 599
+ +G+L G + A++ ++ +G + +H+ DY + T H + G +GIKV
Sbjct: 153 IRCAGRLGGAEIARAEQYKEGKIPLHTLRANVDYA-SVTAHTI--AGAIGIKV 202
>UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellular
organisms|Rep: 30S ribosomal protein S3 - Azoarcus sp.
(strain BH72)
Length = 260
Score = 48.0 bits (109), Expect = 2e-04
Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 2/165 (1%)
Frame = +3
Query: 111 FLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQS 290
+L + LA V + + + + + R V+G+KG I L +QK +P
Sbjct: 42 YLKKRLAHASVGRVVIERPAKNARVTLFSARPGVVIGKKGEDIEALKRDLQKIVGVP--- 98
Query: 291 VELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLR 470
V + E+V + A A+S+ +L + RRA ++ M GA+G +++ SG+L
Sbjct: 99 VHVNIEEVRKPEIDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLN 158
Query: 471 G-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 599
G + A++ + +G + +H+ DY GV+GIKV
Sbjct: 159 GAEIARTEWYREGRVPLHTLRANIDY---GVSEAQTTYGVIGIKV 200
>UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197;
Bacteria|Rep: 30S ribosomal protein S3 - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 301
Score = 47.2 bits (107), Expect = 3e-04
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 2/178 (1%)
Frame = +3
Query: 72 FVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 251
F G + +L +L S V + + I I + R V+G+KG I L
Sbjct: 29 FAGMLAEDIKVREYLKAKLKNAAVSRVLIERPAKNARITIFSARPGVVIGKKGEDIENLK 88
Query: 252 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 431
+ ++ +P V + E+V + A A+S+ +L + RRA ++ M G
Sbjct: 89 KELSRQLGVP---VAVNIEEVRKPEIDAKLIADSITQQLEKRIMFRRAMKRAMQNAMRLG 145
Query: 432 ARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 599
A G +++ SG+L G + A+ + +G + +H+ DY T GV+G+KV
Sbjct: 146 ALGIKIMSSGRLNGIEIARCEWYREGRVPLHTLRADIDY---GTSEAKTTYGVIGVKV 200
>UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5;
Thermotogaceae|Rep: 30S ribosomal protein S3 -
Thermotoga maritima
Length = 209
Score = 46.4 bits (105), Expect = 6e-04
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Frame = +3
Query: 174 RSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAES 353
R I + R ++G KG I L ++++FN + V + E++ T L A AES
Sbjct: 63 RINITVKTARPGIIIGRKGSEITSLREELERKFN---RRVVINIEEIKTPELDAQLVAES 119
Query: 354 LRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGD 527
+ ++ + + A + M GA+G +V+V+G+L G + A+ ++ G L +
Sbjct: 120 IASRIEKRASYKVAMKRAIMNAMRKGAQGIKVMVAGRLGGAEIARREWYLRGRLPLQKIK 179
Query: 528 PCNDYVNTATRHVLLRQGVLGIKVKI 605
DY TAT + G +GIKV I
Sbjct: 180 AIIDY-GTAT--AWTKYGTIGIKVWI 202
>UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3;
Planctomycetaceae|Rep: 30S ribosomal protein S3 -
Rhodopirellula baltica
Length = 236
Score = 45.6 bits (103), Expect = 0.001
Identities = 29/112 (25%), Positives = 56/112 (50%)
Frame = +3
Query: 138 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 317
G +E+ T +++ R ++G+KG+ I L + +Q N+ + + L E+V
Sbjct: 56 GIDRIEIERTRDEVRVMLYVARPGLIIGKKGQEIEILQAELQ---NLVGRRINLKVEEVG 112
Query: 318 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 473
L A AE + +L + RR +L M++GA+G ++ ++G+L G
Sbjct: 113 RPELQAQLVAEDISQQLAKRSSFRRTMKRMLEQTMDAGAKGIKIQMAGRLGG 164
>UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n=1;
unknown|Rep: UPI00015BD7E8 UniRef100 entry - unknown
Length = 231
Score = 44.4 bits (100), Expect = 0.002
Identities = 40/170 (23%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Frame = +3
Query: 102 LNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 281
+ ++ G S V + + + + I++++ ++G KG + +L + +++ +
Sbjct: 39 IRKYIKERYKSAGISKVTIERSGEKIRVRILSSKPGIIIGRKGAEVDQLKNDLERI--VK 96
Query: 282 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 461
+ + L ++V L A AE + ++ ++ RRA + ++SGA+G +V V G
Sbjct: 97 NKDISLSVDEVRVPQLDAQLVAEDIALQIERRVSHRRAMKRAIDNAIKSGAKGIKVQVKG 156
Query: 462 KLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 605
++ G A++ F+ G M + + DY AT + + G+LGIKV I
Sbjct: 157 RIGGADLARAEWFLVGRMPLQTLRADIDY-GYATAYT--KYGILGIKVWI 203
>UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3;
n=78; Streptophyta|Rep: Chloroplast 30S ribosomal
protein S3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 218
Score = 43.6 bits (98), Expect = 0.004
Identities = 34/161 (21%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Frame = +3
Query: 135 DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKV 314
+G + +E++ +III + ++ +K RR+ EL VQK N + + + ++
Sbjct: 58 EGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRI 117
Query: 315 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 494
+ AE + +L ++ R+A + ++ +G +V ++G++ G+ ++
Sbjct: 118 SNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVE 177
Query: 495 FV-DG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 611
++ +G + + + + DY + R + GVLGIK+ I +
Sbjct: 178 WIREGRVPLQTIEAKIDYCSYTVRTI---YGVLGIKIWIFV 215
>UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39;
Bacteria|Rep: 30S ribosomal protein S3 - Streptococcus
pneumoniae
Length = 217
Score = 43.2 bits (97), Expect = 0.005
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 2/170 (1%)
Frame = +3
Query: 102 LNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 281
+ F+ +ELA+ S +E+ + + + + V+G+ G + L + + K +
Sbjct: 38 IRKFVQKELADAAVSTIEIERAVNKVNVSLHTAKPGMVIGKGGANVDALRAKLNK---LT 94
Query: 282 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 461
+ V + ++ L A E + +L +A RRA ++ M +GA+G + VSG
Sbjct: 95 GKQVHINIIEIKQPDLDAHLVGEGIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSG 154
Query: 462 KLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 605
+L G A++ + +G + +H+ DY A G LG+KV I
Sbjct: 155 RLNGADIARAEGYSEGTVPLHTLRADIDY---AWEEADTTYGKLGVKVWI 201
>UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 283
Score = 41.5 bits (93), Expect = 0.016
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Frame = +3
Query: 102 LNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 281
+ FL + G +E+ + I + R V+G+ G I L ++K
Sbjct: 39 IRDFLKKTQYGAGIPKIEIERDNAKVRIYLHCARPGVVIGKGGEAIEALRLQLEKMLG-- 96
Query: 282 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 461
+SV L +V + A AE++ +L + RRA + M GARG + VSG
Sbjct: 97 -KSVALNIVEVKNPDMDAQLIAENIAQQLEKRIGFRRAMKNAMGRAMRMGARGIKTQVSG 155
Query: 462 KLRG-QRAKSMKFVDG 506
+L G + A++ + DG
Sbjct: 156 RLGGAEIARTEHYHDG 171
>UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27;
Bacteria|Rep: 30S ribosomal protein S3 -
Propionibacterium acnes
Length = 269
Score = 41.5 bits (93), Expect = 0.016
Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 2/170 (1%)
Frame = +3
Query: 102 LNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 281
+ +L + L G S +E+ R I + A R V+G G + ++K +
Sbjct: 38 IREWLHKNLERAGLSSIEIERRSERVTIFLYAARPGIVIGRNGAEAERVRGELEK---LT 94
Query: 282 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 461
+ ++L +V + A A+ + +L +A RRA + M +GA G + SG
Sbjct: 95 GKQIQLNILEVKSPETDAQLVAQGIAEQLAARVAFRRAMRKAQQSAMNAGALGIRIKCSG 154
Query: 462 KLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 605
+L G + ++S + +G + +H+ DY R G +G+KV I
Sbjct: 155 RLGGAEMSRSEGYREGRVPLHTLRADIDYGFFEARTTF---GRIGVKVWI 201
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 41.5 bits (93), Expect = 0.016
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 5/154 (3%)
Frame = +3
Query: 159 RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK---RFNIPEQSVELYAEKVATRGL 329
R P R + I + V+G G + L S + K + + V + ++ L
Sbjct: 59 RTEPTRINLTIHTAKPGIVIGRGGADVERLRSELSKIVDTYKGQHKRVNINIVEIRKPDL 118
Query: 330 CAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 506
A + + L +A RRA G ++ + +GA+G +VSG+L G A+ ++ +G
Sbjct: 119 NAHLVGQQIAADLERRVAFRRAMRGAIQRVQRAGAKGVRTMVSGRLNGADIARKEQYTEG 178
Query: 507 LM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 605
+ +H+ DY + + G LGIK I
Sbjct: 179 TVPLHTLRADIDY---SWDEAMTSYGNLGIKTWI 209
>UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3;
Entomoplasmatales|Rep: 30S ribosomal protein S3 -
Mesoplasma florum (Acholeplasma florum)
Length = 241
Score = 41.5 bits (93), Expect = 0.016
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Frame = +3
Query: 126 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 305
L + S +++ T +II R VLG++G+ + + + VQK VE+
Sbjct: 47 LKDAAVSKIKIERTNSNITLIIRTARPAIVLGQEGKNVSNIATAVQKIAKDRNLKVEVKV 106
Query: 306 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRA 482
+V A A + ++ + R +R +++G +G + VSG+L G + A
Sbjct: 107 IEVKNPDADATLVARWIGEQITNRASFRTVQKLAIRKALKAGVKGIKTSVSGRLGGVEMA 166
Query: 483 KSMKFVDG 506
++ +++G
Sbjct: 167 RTEGYIEG 174
>UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94;
Bacteria|Rep: 30S ribosomal protein S3 - Frankia sp.
(strain CcI3)
Length = 315
Score = 41.5 bits (93), Expect = 0.016
Identities = 31/132 (23%), Positives = 59/132 (44%)
Frame = +3
Query: 102 LNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 281
+ ++R + G S V++ T R + I R V+G +G + ++K +
Sbjct: 38 IRKMMSRGMERAGISRVDIERTQGRLRVDIHTARPGIVIGRRGAEADRIRGDLEK---LT 94
Query: 282 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 461
+ V+L +V + A A+ + +L ++ RRA ++ M+ GA+G V SG
Sbjct: 95 GKQVQLNILEVKNPEVDAQLVAQGVAEQLSSRVSFRRAMRKAMQTAMKGGAKGIRVQCSG 154
Query: 462 KLRGQRAKSMKF 497
+L G +F
Sbjct: 155 RLGGAEMSRSEF 166
>UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S3 - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 257
Score = 41.1 bits (92), Expect = 0.021
Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 2/170 (1%)
Frame = +3
Query: 102 LNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 281
+ +L+ + G VE+ R + + A ++ ++G + + + + K
Sbjct: 40 IRKYLSTKYKNAGIDHVEIERDQQRVNVYVYAVQSGLLIGTEASEKKLIELAINKIVG-R 98
Query: 282 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 461
+Q V L +V L A A + + ++ R A V++ ++++GARG + VSG
Sbjct: 99 KQLVSLKVVEVQIPELQASLMAREIADAIENRVSFRIAQKMVIKKVLKAGARGIKTHVSG 158
Query: 462 KLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 605
+L G + A+ + G+M +H+ DY + + G++G+KV I
Sbjct: 159 RLGGVEMAREEGYTQGVMTLHTLRADIDY---SMQEAHTTYGIIGVKVWI 205
>UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18;
Bacteria|Rep: 30S ribosomal protein S3 - Dehalococcoides
sp. (strain CBDB1)
Length = 278
Score = 40.3 bits (90), Expect = 0.037
Identities = 39/168 (23%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = +3
Query: 102 LNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 281
L ++++ + S V++ + + + R V+G G+R+ E+ ++ ++
Sbjct: 39 LRKAISKKYVDAAISQVDIERQSNKVTVSVRTARPGIVIGRGGQRVDEMRHFLE---DLI 95
Query: 282 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 461
+ V+L +++ L A A S+ ++ +A RRA + M++GA+G ++ SG
Sbjct: 96 GKKVQLNIVEISQAELDAFLVARSVAEQIERRVAYRRAMKQAIFRSMQAGAKGIKICASG 155
Query: 462 KLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 599
+L G + A+ +G + +H+ DY T L G +GIKV
Sbjct: 156 RLGGVEIARREVMHEGRVPLHTLRADIDYGCTRAHTAL---GDVGIKV 200
>UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellular
organisms|Rep: 30S ribosomal protein S3 - Mesorhizobium
sp. (strain BNC1)
Length = 235
Score = 38.3 bits (85), Expect = 0.15
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 2/168 (1%)
Frame = +3
Query: 102 LNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 281
+ ++ EL + S V + + + I + R ++G+KG I +L + + N
Sbjct: 39 IRTYIENELKQAAISKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLRRKITQMTNA- 97
Query: 282 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 461
L +V + A A+S+ +L +A RRA ++ M GA G + +G
Sbjct: 98 --ETHLNIVEVRKPEIDARLIAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCTG 155
Query: 462 KLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 599
+L G + A+ + +G + +H+ DY T GV G+KV
Sbjct: 156 RLGGAEIARIEWYREGRVPLHTLRADIDY---GTAEAKTAYGVCGVKV 200
>UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2;
Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 235
Score = 38.3 bits (85), Expect = 0.15
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Frame = +3
Query: 150 VEVRVTPIRSEIIIMATRTQSVLGEKGR---RIRELTSVVQKRFN--------IPEQSVE 296
++ +V + E+ I TR ++G K + ++++L +Q N P V
Sbjct: 57 IQRKVDRTQVEVEIRTTRPGLLVGRKRQNCDKLKQLRDELQVELNKFRAKNGVSPTAKVA 116
Query: 297 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 476
L V + AI AE L +L +A RRA VL I +G ++ VSG+L G
Sbjct: 117 LQVTTVQNKSSEAIVIAEFLVNQLERRIAFRRALRRVLSIIQRDRVQGAKIQVSGRLNGA 176
Query: 477 RAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 599
+++ + D V+ R G+LGIKV
Sbjct: 177 EIARSEWIRTGRVPLQTLRAD-VDYCHREAKTIYGILGIKV 216
>UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4;
Leptospira|Rep: 30S ribosomal protein S3 - Leptospira
interrogans
Length = 225
Score = 37.5 bits (83), Expect = 0.26
Identities = 27/124 (21%), Positives = 51/124 (41%)
Frame = +3
Query: 102 LNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 281
+ F+ G V + P + + + + V+G+KG I + +++ + P
Sbjct: 38 IRKFVQNRFNNAGVVKVVIERFPEKINVNLHTAKPGIVIGQKGANIEAVKKILKTMTDKP 97
Query: 282 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 461
+ +K T C AES+ ++ RR LR M G G ++++SG
Sbjct: 98 VNLNIIEVKKPETVAQCI---AESIALQIEQRQPFRRVMKQELRRAMRGGVEGIKILISG 154
Query: 462 KLRG 473
+L G
Sbjct: 155 RLNG 158
>UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_3592, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 207
Score = 36.3 bits (80), Expect = 0.61
Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Frame = +3
Query: 180 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 359
++II + ++ K RRI EL VQK N + + + ++ AE +
Sbjct: 62 QVIIYMGFPKLLVEGKPRRIEELQMNVQKELNYVNRKLNIAITRITKPYGHPNILAEFIA 121
Query: 360 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV-DG-LMIHSGDPC 533
+L ++ R+A + ++ +G +V ++G++ G+ ++++ +G + + +
Sbjct: 122 GQLRNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAK 181
Query: 534 NDYVNTATRHVLLRQGVLGIKVKIML 611
DY + R + GVLGIK+ I +
Sbjct: 182 IDYCSYRVRTI---YGVLGIKIWIFV 204
>UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 617
Score = 36.3 bits (80), Expect = 0.61
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +3
Query: 186 IIMATRTQSVLGEK-GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 362
+I TRT S+ + ++IREL SV Q +I + + A A RGL A+ ES+R
Sbjct: 101 VIRQTRTLSMTSAQFPKKIRELQSVTQSYVSIDATTKDKAAALAAARGLGRNAKIESVRL 160
Query: 363 KLIGGLAVRRACYGVLRFIMESGARG 440
++ L + +C G+ M + + G
Sbjct: 161 PMLTVLKL-HSCEGITSASMAAISHG 185
>UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163;
Firmicutes|Rep: 30S ribosomal protein S3 - Onion yellows
phytoplasma
Length = 252
Score = 36.3 bits (80), Expect = 0.61
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Frame = +3
Query: 174 RSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAES 353
R I + + ++G+ G +L V K + ++ V L +V A+ A++
Sbjct: 67 RITISVHTAKPGVIIGKDGDTRNKL---VAKLKELTQKDVNLNVLEVKNSDKIALLIAQN 123
Query: 354 LRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGD 527
+ +L + RR ++ +++GA+G + ++SG+L G + A+S +G + +H+
Sbjct: 124 MAEQLENRMFFRRVQKMAIQKALKAGAKGVKTLISGRLGGAEIARSEGHAEGRVPLHTLR 183
Query: 528 PCNDYVNTATRHVLLRQGVLGIKVKI 605
DY A GVLGIKV I
Sbjct: 184 ADIDY---AAVEAHTTYGVLGIKVWI 206
>UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1;
Thermus phage phiYS40|Rep: Putative uncharacterized
protein - Thermus phage phiYS40
Length = 1014
Score = 34.7 bits (76), Expect = 1.9
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = +3
Query: 87 VFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK 266
+FK+ FL+R L+E Y+ ++ RS I R L +K + E+ + ++
Sbjct: 228 IFKSEREIFLSRTLSEF-YNESLNAISIARSNFIAQLNRVNESL-QKAQSPEEVARLQEE 285
Query: 267 RFNIPEQSVELYAEKVATR 323
RFN + +LYAE++ R
Sbjct: 286 RFNYLKSLTQLYAEELKIR 304
>UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1;
n=9; Endopterygota|Rep: Drosophila dodeca-satellite
protein 1 - Drosophila melanogaster (Fruit fly)
Length = 1301
Score = 34.7 bits (76), Expect = 1.9
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 165 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 341
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 342 QAE 350
QAE
Sbjct: 225 QAE 227
>UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas
palustris|Rep: PsbAa - Rhodopseudomonas palustris
Length = 403
Score = 29.1 bits (62), Expect(2) = 2.2
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 279 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGA--RGCEVV 452
P + L KVA L I A +LR +LI G V GV+ + + A RGCEV
Sbjct: 114 PRRLAALEGTKVAVHYLRGIDDALTLRPQLIEGHRVALVGGGVIGLEVAAAALSRGCEVT 173
Query: 453 V 455
+
Sbjct: 174 I 174
Score = 24.2 bits (50), Expect(2) = 2.2
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +3
Query: 435 RGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 599
RG ++ +L GQ+ S+ DG ++ + + + L+ G+ G++V
Sbjct: 201 RGAAILCKAELSGQQTHSLTLADGRVVDADVIVVGIGSEPAGELALQIGLAGVQV 255
>UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 328
Score = 34.3 bits (75), Expect = 2.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 341 PGRISKIQAYRRSRCTSCLLWCSPFHH 421
PGR +A RRSRC+ C W HH
Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266
>UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus
carota|Rep: Glycine-rich protein - Daucus carota
(Carrot)
Length = 111
Score = 33.1 bits (72), Expect = 5.7
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 401 WCSPFHHGIWCPWL*SCCIWQAAWSTCQINEVCRW 505
W P G WC W C IW S C+ RW
Sbjct: 32 WWIPPRRGRWCWWRCRCWIWSRLRSWCRSRRRIRW 66
>UniRef50_Q7SDC7 Cluster: Predicted protein; n=2; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 384
Score = 33.1 bits (72), Expect = 5.7
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = -3
Query: 350 FGLGDSAKATSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHTLCPGGHNNDLRAD 171
FG G + K TS+ S+ Y+ W+ S+ G AS SE C + ++
Sbjct: 23 FGAGQTTKPTSTE--SVSTYQDPWSESSIESSGCDKPVVASTTSEKKDCANDDTSAVKKQ 80
Query: 170 GSDPHF-HAGVAVLGQLPSEEXIEXCLENPXSN 75
DP H G V E + P +N
Sbjct: 81 NKDPRMTHIGADVSASKSDESKVSTDKNPPTAN 113
>UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin H
- Ostreococcus tauri
Length = 322
Score = 32.7 bits (71), Expect = 7.5
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +3
Query: 369 IGGLAVRRACYGVLR----FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMI 515
+ GL R CYG R F+M+ GC+ S +L R K++ VD LM+
Sbjct: 146 LSGLKFRLVCYGATRPLDGFLMDVEDGGCKGATSKQLIECRKKALDIVDRLML 198
>UniRef50_A7I6D9 Cluster: Multi-sensor signal transduction histidine
kinase precursor; n=1; Candidatus Methanoregula boonei
6A8|Rep: Multi-sensor signal transduction histidine
kinase precursor - Methanoregula boonei (strain 6A8)
Length = 729
Score = 32.7 bits (71), Expect = 7.5
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +3
Query: 18 FSAPVAIMAVXNLSNQXKFVGX-GVFKAXLNXFLTRELAEDGYSGVEVRVTP-IRSEII- 188
+ P+ I+ N++ G+ A +N + + +L ++ Y G+EVR P IR+ ++
Sbjct: 149 YQPPLVIITTRNVTGMLSLDDFKGMTVAAVNGYTSYDLLKEKYPGIEVRTEPDIRTGLLD 208
Query: 189 IMATRTQSVLGE 224
+ RT + LG+
Sbjct: 209 VSLGRTDAYLGD 220
>UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8;
Euteleostomi|Rep: Transmembrane protein 56 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 264
Score = 32.7 bits (71), Expect = 7.5
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 396 CYGVLRFI-MESGARGCEVVVSGKLRGQRAKSMK 494
C +L I M ARGC V++GKL+G++A S K
Sbjct: 222 CLDILNIIWMYKIARGCYKVITGKLKGRKADSKK 255
>UniRef50_Q225J0 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 281
Score = 32.3 bits (70), Expect = 9.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 322 RVATFSAYNSTDCSGMLNRFCTTEVSSRILRPFSPSTLCVL 200
R AT Y ++DC + +FC +++S I+ S +C+L
Sbjct: 58 REATTYCYTTSDCIRSIYQFCRSQISRHIINERENSQICLL 98
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,374,750
Number of Sequences: 1657284
Number of extensions: 12421680
Number of successful extensions: 34031
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 32921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33992
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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