Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J06
         (631 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    25   0.69 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.69 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.69 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.2  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   6.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.4  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 290 CRIVC*KGGYSWPLRYRPGRISKIQA 367
           CR+VC K G  WP   +P  ++KI +
Sbjct: 61  CRLVCGKYGALWP---QPTSVTKISS 83


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 421 WNLVPVVVKLLYLASC 468
           WNL+P+ V +L  A+C
Sbjct: 922 WNLLPIAVFILVCATC 937


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 421 WNLVPVVVKLLYLASC 468
           WNL+P+ V +L  A+C
Sbjct: 922 WNLLPIAVFILVCATC 937


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 419 DETENTIASTTYSETSDKLVS*RFGLG 339
           DET+N  +  TY+E  +KL      LG
Sbjct: 340 DETKNHYSKNTYNEQGNKLADLYKSLG 366


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 419 DETENTIASTTYSETSDKLVS*RFGLG 339
           DET+N  +  TY+E  +KL      LG
Sbjct: 232 DETKNHYSKNTYNEQGNKLADLYKSLG 258


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 260 TEAIQHSRAICRIVC*KGGYSWP 328
           TEA   S   CR+ C +    WP
Sbjct: 43  TEATGLSLPACRLFCSEAAALWP 65


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -2

Query: 453 QQLHNH--GHQIP**NGEHHSKHDVQRDL 373
           Q ++NH  GH +   + +HH  H  Q+ +
Sbjct: 160 QSMNNHHMGHHMQEQHPQHHQPHHQQQHM 188


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -2

Query: 453 QQLHNH--GHQIP**NGEHHSKHDVQRDL 373
           Q ++NH  GH +   + +HH  H  Q+ +
Sbjct: 162 QSMNNHHMGHHMQEQHPQHHQPHHQQQHM 190


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,911
Number of Sequences: 336
Number of extensions: 3027
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)