Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J06
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   292   2e-80
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   1.3  
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    27   1.7  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    27   1.7  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    27   1.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.0  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.2  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   9.0  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   9.0  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   9.0  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   9.0  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    25   9.0  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  292 bits (717), Expect = 2e-80
 Identities = 140/191 (73%), Positives = 159/191 (83%)
 Frame = +3

Query: 42  AVXNLSNQXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 221
           A   +S + KFV  GVF A LN F TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 222 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 401
           EKGRRIRELT++VQKRF   E +VELYAEKV  RGLCA+AQ ESLRYKL+ GLAVRRA Y
Sbjct: 63  EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 122

Query: 402 GVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQG 581
           GVLR++ME+GA+GCEVV+SGKLR  RAKSMKF DG MIHSG P  D++++ATRHVLLRQG
Sbjct: 123 GVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQG 182

Query: 582 VLGIKVKIMLP 614
           VLG+KVKIMLP
Sbjct: 183 VLGVKVKIMLP 193


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 408  LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 563
            + F ME   +  + ++  +L+     S K  D ++I  GD  ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 192 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 368
           MATR Q       RR  E  + +QK +N  + ++EL  E+V   G   +  + +  RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783

Query: 369 IG 374
           +G
Sbjct: 784 LG 785


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 473  STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 562
            + C   + CR W   P W+ +  + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 310 FSAYNSTDCSGMLNRFCTTEVSSR 239
           + +Y S+DC G+L+R   T+   R
Sbjct: 360 YPSYLSSDCKGLLSRMLVTDPLKR 383


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 471 GQRAKSMKFVDGLMIHSGDPCNDYVN 548
           G+R K + F D    H G P  DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = -3

Query: 506 SIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKLVS*RFGLG--DS 333
           S+Y    +   T+ LA+YN             E  I+ST  S      V  R  LG    
Sbjct: 296 SVYSTMAYAEATSNLAKYNTIAFGNCLDEKFEEEIISSTARSFFLGDEVKKRLLLGAYSL 355

Query: 332 AKATSSHLFS 303
           A+  SS LFS
Sbjct: 356 ARMNSSDLFS 365


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 296 FYRLLWNVESLLYYGSQL 243
           FYRL W  + +LY  SQ+
Sbjct: 643 FYRLCWKDKGILYQDSQI 660


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -1

Query: 370 ISLYLRDSAWAIAQRPRVATFSAYNSTDCSGMLNRFCTTEVSSRILRPFSPST 212
           + L L+    A+     ++      S+     +N F  T  SSR L PFS +T
Sbjct: 101 VRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDAT 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,283
Number of Sequences: 5004
Number of extensions: 49753
Number of successful extensions: 109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)