Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J06
(631 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 310 4e-85
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 30 1.2
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 30 1.2
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 2.1
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical p... 29 3.6
Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.6
X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein... 29 3.6
U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein... 29 3.6
U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein... 29 3.6
U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein... 29 3.6
U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protei... 29 3.6
AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3 pr... 29 3.6
AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone prote... 29 3.6
AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone prote... 29 3.6
Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical pr... 27 8.4
U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein... 27 8.4
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 310 bits (762), Expect = 4e-85
Identities = 149/193 (77%), Positives = 169/193 (87%)
Frame = +3
Query: 51 NLSNQXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKG 230
N++ + K V G+FKA LN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+VLGE+G
Sbjct: 6 NVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERG 65
Query: 231 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 410
RRI+ELTSVVQKRF E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRACYGVL
Sbjct: 66 RRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVL 125
Query: 411 RFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLG 590
RFIMESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+ A RHV LRQGV+G
Sbjct: 126 RFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIG 185
Query: 591 IKVKIMLPWDXQG 629
IKVKIMLP+D +G
Sbjct: 186 IKVKIMLPYDPRG 198
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +2
Query: 545 QHCYQTCASQTRSTRNQGQNHVA 613
Q CY CAS T ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +2
Query: 545 QHCYQTCASQTRSTRNQGQNHVA 613
Q CY CAS T ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 204 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 323
+ S+ G+KG+ +REL + + K ++ E++ + AE A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 126 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 287
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 126 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 287
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720
>Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical
protein T10C6.13 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.7 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.3 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.2 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical
protein F54E12.1 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical
protein F08G2.3 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical
protein B0035.10 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical
protein F22B3.2 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein 6
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein 17
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein 27
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protein
59 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone protein
32 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone protein
49 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical
protein Y49E10.6 protein.
Length = 136
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein 71
protein.
Length = 136
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 311 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 415
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,739
Number of Sequences: 27780
Number of extensions: 289493
Number of successful extensions: 756
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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