Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J06
(631 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C) 313 7e-86
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso... 310 7e-85
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A) 309 1e-84
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 32 0.36
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 32 0.36
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel... 31 0.63
At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel... 30 1.1
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU... 28 5.9
At5g54230.1 68418.m06755 myb family transcription factor (MYB49)... 27 7.8
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 27 7.8
At2g36200.1 68415.m04444 kinesin motor protein-related 27 7.8
>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
Length = 248
Score = 313 bits (768), Expect = 7e-86
Identities = 150/192 (78%), Positives = 167/192 (86%)
Frame = +3
Query: 54 LSNQXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 233
+S + KFV GVF A LN LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 234 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 413
RIRELTS+VQKRF P+ SVELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 414 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 593
F+MESGA+GCEV+VSGKLR RAKSMKF DG M+ SG P +Y++ A RHVLLRQGVLG+
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGL 184
Query: 594 KVKIMLPWDXQG 629
KVKIML WD +G
Sbjct: 185 KVKIMLDWDPKG 196
>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
protein S3a - Xenopus laevis, PIR:R3XL3A
Length = 249
Score = 310 bits (760), Expect = 7e-85
Identities = 149/192 (77%), Positives = 166/192 (86%)
Frame = +3
Query: 54 LSNQXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 233
+S + KFV GVF A LN LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 234 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 413
RIRELTS+VQKRF P SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 414 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 593
F+MESGA+GCEV+VSGKLR RAKSMKF DG M+ SG P +Y+++A RHVLLRQGVLGI
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGI 184
Query: 594 KVKIMLPWDXQG 629
KVK+ML WD +G
Sbjct: 185 KVKVMLDWDPKG 196
>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
Length = 250
Score = 309 bits (758), Expect = 1e-84
Identities = 150/192 (78%), Positives = 164/192 (85%)
Frame = +3
Query: 54 LSNQXKFVGXGVFKAXLNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 233
+S + KFV GVF A LN LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 234 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 413
RIRELTS+VQKRF P SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 414 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 593
F+MESGA+GCEV+VSGKLR RAKSMKF DG M+ SG P +Y++ A RHVLLRQGVLGI
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGI 184
Query: 594 KVKIMLPWDXQG 629
KVKIML WD G
Sbjct: 185 KVKIMLDWDPTG 196
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 251 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 162
S+L + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 251 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 162
S+L + + LSEH+L GH +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395
>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
putative (CNGC16) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 705
Score = 31.1 bits (67), Expect = 0.63
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 350 FGLGDSAKATSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHTL 207
FG + TSS F FY L W + +L YG L +AS LS T+
Sbjct: 309 FGDAFTNDVTSSPFFDKYFYCLWWGLRNLSSYGQSL--AASTLSSETI 354
>At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel,
putative (CNGC17) similar to cyclic nucleotide and
calmodulin-regulated ion channel cngc5 GI:4581205 from
[Arabidopsis thaliana]
Length = 720
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 350 FGLGDSAKATSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHT 210
FG + SS F FY L W ++ L YG L+ + F+ E T
Sbjct: 333 FGNAITKNVVSSQFFERYFYCLWWGLQQLSSYGQNLS-TTMFMGETT 378
>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
Identical to phosphoribosylamine--glycine ligase,
chloroplast [precursor] SP:P52420 from [Arabidopsis
thaliana]
Length = 532
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 429 GARGCEVVVSGKLRGQRAKSMKFVDG 506
G+ GC+VVV L G+ A VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298
>At5g54230.1 68418.m06755 myb family transcription factor (MYB49)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 319
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -3
Query: 335 SAKATSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHTL-CPGGHNNDLRADGSD 162
SA S H+ + ++ WN S + G+ + S S T GG +D + GSD
Sbjct: 243 SAAFVSDHINDGENFKAGWNFSSSMLAGTSSSSSTPLNSSSTFYVNGGSEDDRESFGSD 301
>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 442
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 251 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 162
++L + LSEH++ GH ++ ADG D
Sbjct: 402 TELLQYVARLSEHSVIVSGHRKEIFADGCD 431
>At2g36200.1 68415.m04444 kinesin motor protein-related
Length = 1056
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = -3
Query: 611 QHDFDLDS*YSLSEKHMSGSSVDVI--IARVSRVDHESIYKL 492
QHD ++DS + +EK ++ +S D+I I R+S + S+ K+
Sbjct: 865 QHDAEVDSARTAAEKDVTKNSDDIIQQIERMSEDEKASVSKI 906
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,634,706
Number of Sequences: 28952
Number of extensions: 277401
Number of successful extensions: 689
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -