Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J05
         (356 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...    82   1e-16
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...    81   2e-16
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...    81   3e-16
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788     27   4.3  

>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 33/72 (45%), Positives = 48/72 (66%)
 Frame = +1

Query: 1   CGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG 180
           CG  S+H+QKS C+ CGYPAA++R Y+WSVKA          MR+++ V RRF++ F+EG
Sbjct: 22  CGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFREG 81

Query: 181 KPTPPKKAVASS 216
               P+K  A++
Sbjct: 82  TEATPRKRAAAA 93


>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 33/70 (47%), Positives = 46/70 (65%)
 Frame = +1

Query: 1   CGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG 180
           CG  S+H+QKS C+ CGYPAA++R Y+WSVKA          MR+++ V RRF++ F+EG
Sbjct: 43  CGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFREG 102

Query: 181 KPTPPKKAVA 210
               P+K  A
Sbjct: 103 TEATPRKRAA 112


>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 33/72 (45%), Positives = 48/72 (66%)
 Frame = +1

Query: 1   CGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG 180
           CG  S+H+QKS C+ CGYPAA++R Y+WSVKA          MR+L+ V +RF++ F+EG
Sbjct: 22  CGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYLRHVPKRFKSNFREG 81

Query: 181 KPTPPKKAVASS 216
               P+K  A++
Sbjct: 82  TEAAPRKKGAAA 93


>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
          Length = 326

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 51  ISCSKITILPLVSEG*AQEDYWNW--PHASFEDC 146
           I+   +T +  +S   + +D W W  PH  +EDC
Sbjct: 116 IALPPVTTIEQLSIARSGDDKWTWLPPHKDYEDC 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,584,145
Number of Sequences: 37544
Number of extensions: 105841
Number of successful extensions: 215
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)