Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J05
         (356 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) simi...    83   5e-17
At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) simi...    82   9e-17
At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almo...    81   2e-16
At5g64260.1 68418.m08073 phosphate-responsive protein, putative ...    26   8.5  

>At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) similar
           to SP:Q43292 from [Arabidopsis thaliana]
          Length = 95

 Score = 83.0 bits (196), Expect = 5e-17
 Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = +1

Query: 1   CGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG 180
           CG  S+HIQKS+C+ C YPAA+ R+Y+WSVKA          MR+L+ V RRF+ GF+EG
Sbjct: 22  CGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREG 81

Query: 181 KPTPPK-KAVASS 216
               P+ K VASS
Sbjct: 82  TEAKPRNKGVASS 94


>At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) similar
           to ribosomal protein L37 GB:BAA04888 from [Homo sapiens]
          Length = 95

 Score = 82.2 bits (194), Expect = 9e-17
 Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = +1

Query: 1   CGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG 180
           CG  S+HIQKS+C+ C YPAA+ R+Y+WSVKA          MR+L+ V RRF+ GF+EG
Sbjct: 22  CGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREG 81

Query: 181 KPTPPK-KAVASS 216
               P+ KA ASS
Sbjct: 82  TEAKPRSKASASS 94


>At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almost
           identical to GB:Q43292
          Length = 95

 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = +1

Query: 1   CGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG 180
           CG  S+HIQKS+C+ C YPAA+ R+Y+WSVKA          MR+L+ V RRF+  F+EG
Sbjct: 22  CGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREG 81

Query: 181 -KPTPPKKAVASS 216
            + TP  KA ASS
Sbjct: 82  TQATPRNKAAASS 94


>At5g64260.1 68418.m08073 phosphate-responsive protein, putative
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 305

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 145 VRRRFRNGFKEGKPTPPKKAVAS 213
           V   F NG+ +G PT P +AV++
Sbjct: 229 VTNPFNNGYYQGPPTAPLEAVSA 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,102,078
Number of Sequences: 28952
Number of extensions: 81050
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)