Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J04
(474 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 36 0.002
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 33 0.017
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 31 0.068
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 31 0.12
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 31 0.12
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 30 0.21
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.21
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.27
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 28 0.63
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 1.1
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 27 1.1
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M... 27 1.9
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 1.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 1.9
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 26 3.4
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc... 26 3.4
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 25 5.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 5.9
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 5.9
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 7.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.8
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 7.8
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 36.3 bits (80), Expect = 0.002
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 188 NRISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYR 355
NR+S + ++L+E SK QT S L +RD ++ D+ + ++ D +E R
Sbjct: 278 NRLSTIEKELEELSKDQTADQAISRRLERERDELDLRLLDIQNKLSEMDSDRAESR 333
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 33.5 bits (73), Expect = 0.017
Identities = 21/85 (24%), Positives = 40/85 (47%)
Frame = +2
Query: 188 NRISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLT 367
N +SE+ + + + + L Q+ S +K S ++ T+ E D R +L
Sbjct: 342 NELSEILPKYNAIVSEADDLNKRIMLLKNQKQSLLDKQSRTSQFTTKKERD-EWIRNQLL 400
Query: 368 KSEIQINNTKDDVNMCKTELQSLKN 442
+ IN+TK++ + KTE ++N
Sbjct: 401 QINRNINSTKENSDYLKTEYDEMEN 425
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 31.5 bits (68), Expect = 0.068
Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +2
Query: 185 RNRISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKL 364
+N I+E+ Q ++ + ++ LLE+ S + + + L E + Y T++
Sbjct: 314 QNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEM 373
Query: 365 TKSEIQINNTKDDVNMCKTELQS--LKNXHVSES 460
++ ++NN + ++ + ++ LK +SES
Sbjct: 374 KEARQKLNNKEALISHYDDDFRAKELKISRLSES 407
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 30.7 bits (66), Expect = 0.12
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +2
Query: 266 LLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQSLKNX 445
L EQ +K++ ++ K + E+ ++ +L+ + + T + + KTELQSL N
Sbjct: 944 LHEQLKFVKDKLNKMSFKKKKNEQRSQSFQVELSNLTSEYDTTTESIATLKTELQSL-NK 1002
Query: 446 HVSE 457
+V E
Sbjct: 1003 YVDE 1006
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.7 bits (66), Expect = 0.12
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 200 EVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEI 379
E+ +LQE +K+ T ++ +L E+ ++ +V N TRL +E L KS +
Sbjct: 1370 ELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRLAAAWNEKCENLKKSSL 1429
Query: 380 -QINNTKDDVNMCKTELQS 433
+ + K ++ EL S
Sbjct: 1430 TRFAHLKQELTNKNKELTS 1448
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 29.9 bits (64), Expect = 0.21
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +2
Query: 185 RNRISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKL 364
+ R+ E+ R + + S Q +E + E + + +K+++L K + + L E+ L
Sbjct: 757 KQRLPELDRLILQ-SDQAIKKIERDMQ--EWKHNKGSKMAELEKEFNQYKHKLDEFTPIL 813
Query: 365 TKSEIQINNTKDDVNMCKTELQS 433
KSE N K + + ELQ+
Sbjct: 814 EKSENDYNGVKLECEQLEGELQN 836
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 29.9 bits (64), Expect = 0.21
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 281 DSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQSLK-NXHVSE 457
D +NK L + +LEE L Y K+ + E Q + + + K Q L+ N +V
Sbjct: 86 DLTANKKIQLREQSRKLEESLLSYHKKVKEMEKQHRSASSKLELAKLSAQQLQTNVNVLR 145
Query: 458 S 460
S
Sbjct: 146 S 146
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 0.27
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Frame = +2
Query: 188 NRISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDL----SEY- 352
N + + LQE ++ EE LLE+ SD HK +L EDL SE+
Sbjct: 274 NSLRAECKTLQE-KLEKCAINEEDSKLLEELKHNVANYSDAIVHKDKLIEDLSTRISEFD 332
Query: 353 RTKLTKSEIQINNTKDDVNMCKTELQSLKNXHVSESAMLE 472
K + + I N K + + + + SLK+ S S + E
Sbjct: 333 NLKSERDTLSIKNEKLE-KLLRNTIGSLKDSRTSNSQLEE 371
Score = 29.5 bits (63), Expect = 0.27
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +2
Query: 266 LLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTKDDVNMCKTE 424
L+E+R +N++SD+ K + + +S R+ L + +++ K D + T+
Sbjct: 1170 LVEERSDLANRLSDMKKSLSDSDNVISVIRSDLVRVNDELDTLKKDKDSLSTQ 1222
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 0.63
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 188 NRISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKL 364
++ E+ +L E KQQ ++ L+ +RD + DL + L+ EY T+L
Sbjct: 181 DKFVEIRSELDEVRKQQDGYYKDQRKLIAERDDEKTALDDLYNQRRALQR---EYDTQL 236
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 263 TLLEQRDSYSNKVSDLNKHKTRLEE 337
+LL ++DS +NK+SD ++H LE+
Sbjct: 495 SLLTKKDSIANKISDQSEHLKVLED 519
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 1.1
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +2
Query: 257 SLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTK----LTKSEIQINNTKDDVNMCKTE 424
SLTL + ++S++V + +K+ R + + EY K ++ +Q++ +K +TE
Sbjct: 119 SLTLQKTLSAFSDQVIEFHKNAERKRKSIKEYAKKQENAYLEAVMQMDKSKSRFKGAETE 178
Query: 425 L-QSLKNXHVSES 460
++L N + +S
Sbjct: 179 YNRALDNKNTGDS 191
>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 26.6 bits (56), Expect = 1.9
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +2
Query: 191 RISEVSRQLQECSKQQTTCMEESLTLLEQRDSY-SNKVSDLNKHKTRLEEDLSEY 352
+I E+++ L+ ++Q + + T ++ S+ S+K + LNK K L++D +EY
Sbjct: 72 KIDELAK-LEHLWQKQINSITQMRTKFDKTKSWLSSKRNTLNKSKESLQKDEAEY 125
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.6 bits (56), Expect = 1.9
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -1
Query: 261 NDSSMHVVCCFEHSCSCLLTSLILFR---NSVSRFQLFN-SERVNKIQT 127
++++ H++C FE +C LTS R ++S Q F SE V+K+ T
Sbjct: 1561 SNTTAHLLCQFEEACRQALTSSKSVRTKLRAISTIQRFPVSEWVSKLDT 1609
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.6 bits (56), Expect = 1.9
Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = +2
Query: 194 ISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKS 373
I ++ LQ+ K + M++ + +Q K+ L + ++ L ++L YR+
Sbjct: 930 IEDLKLALQDELKNRNLLMDDISSYNKQTTKLQEKIKWLERERSILIDELESYRSNQFNY 989
Query: 374 EIQINNTKDDVNMCKTELQ---SLKNXHVSESAML 469
+ + K+++ E+Q + N H + A L
Sbjct: 990 QNNLVQDKNELEERLKEIQKELEVYNNHFMKQAEL 1024
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 3.4
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Frame = +2
Query: 212 QLQECSKQQTTCMEESLT-LLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTK------ 370
Q++E S+ +E + LL + + S LN +L++ LSE TKL +
Sbjct: 29 QIEEMSRGNAKSKDEIIAKLLTEGQALSKNELKLNNTIKQLKKSLSEAETKLKRLDEKQA 88
Query: 371 -SEIQINNTKD 400
E+Q++++K+
Sbjct: 89 TPELQVSDSKE 99
>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
Sen34|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 356 TKLTKSEIQINNTKDDVNMCKTELQSL 436
TK+ K ++ N TKDDV C + QSL
Sbjct: 76 TKVHKQLLE-NTTKDDVKQCLKKRQSL 101
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.0 bits (52), Expect = 5.9
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 239 TTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTK 397
T + SL+L R + N +KH T+ EDL Y + + ++N++K
Sbjct: 608 TINLANSLSLCISRPATWNLGIQHDKHPTKFMEDLLTYGPSIFEELRKLNSSK 660
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 5.9
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 257 SLTLLEQRDSYSNKVSDLNKHKT-RLEEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQS 433
S+ LE+ +++ L + K+ L+ +++ + KLT + NN +++N K +L
Sbjct: 273 SIKELEEEVETQKRLTALWESKSSELQSEVAALQEKLTSQQSLYNNVTEELNNNKQQLLI 332
Query: 434 LKN 442
+N
Sbjct: 333 SEN 335
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 5.9
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 257 SLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRT--KLTKSEIQINNTKD 400
SL + +DS + +SDL LE+ L E L E++ TKD
Sbjct: 970 SLNMQSLKDSDNRTISDLESKNKELEKKLKEADEYWLLIVEELESKRTKD 1019
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 185 RNRISEVSRQLQECSKQQTT 244
RNRI+E++ L E KQQ T
Sbjct: 265 RNRINELNNSLGEIVKQQDT 284
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 7.8
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +2
Query: 266 LLEQRDSYSNKVSDLNK-----HKTRLEEDLSEYRTKLTKSEIQINNTKDDVN 409
LL DS+ NK S+LN K + EE++ E ++ S +++ VN
Sbjct: 440 LLSIFDSFVNKFSELNDSLDQFFKKKYEEEIKETKSPTRSSPRDLSSFSTSVN 492
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = +2
Query: 269 LEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQSLKNXH 448
LE+ + ++ N+H + ++ + RTK + ++ N + ++ + +LQSL +
Sbjct: 1757 LEEEREKNLRIRQDNRH---MHAEIGDIRTKFDELVLEKTNLLKENSILQADLQSLSRVN 1813
Query: 449 VSES 460
S S
Sbjct: 1814 NSSS 1817
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,626,276
Number of Sequences: 5004
Number of extensions: 28556
Number of successful extensions: 133
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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