Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J04
         (474 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        24   2.3  
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              23   4.1  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   5.4  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    22   9.5  

>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 200 EVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEI 379
           E    L+  SK+ T+  E   T+   RD    +   L + K ++EED   YR      EI
Sbjct: 107 EFREYLRNGSKKMTSTWEN--TVQNIRDK--KEAERLRRDKAKVEEDQRHYRELKAADEI 162

Query: 380 Q 382
           +
Sbjct: 163 K 163


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 332 EEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQ 430
           E  LSE    L    +Q+     ++++C+ ELQ
Sbjct: 132 EPSLSEMNESLKLLAMQVAQLSKELSLCRKELQ 164


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 14/81 (17%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
 Frame = +2

Query: 185 RNRISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKL 364
           +  ++ V  Q++    +    M +  T  +  + Y  ++ D  +   ++   +SE   ++
Sbjct: 708 QGELTTVESQIRGLENRLKYSMNDLETSKKNINEYDRQLEDFTRELDQIGPKISEIERRM 767

Query: 365 TKSEIQI-------NNTKDDV 406
            + +++I       NN +DDV
Sbjct: 768 QQRDMKIQDIKESMNNVEDDV 788


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/44 (20%), Positives = 23/44 (52%)
 Frame = +2

Query: 266  LLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTK 397
            +L+ + ++SN      +  T L+ +  ++RT L +  +  +N +
Sbjct: 1000 MLQSQQNWSNVCEAAKQITTILQREWDDFRTSLFEQGVLADNAQ 1043


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 411,204
Number of Sequences: 2352
Number of extensions: 6782
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 41670678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)