Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J04
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   5.1  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   5.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   6.7  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = -1

Query: 234 CFEHSCSCLLTSLILFRNSVSRFQLFNSERVNKIQTAN 121
           CF  + SCL    + F++ ++       ++  +IQ  N
Sbjct: 48  CFIDAGSCLTPDSVFFKSHITEAFQTQCKKCTEIQKQN 85


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = -1

Query: 234 CFEHSCSCLLTSLILFRNSVSRFQLFNSERVNKIQTAN 121
           CF  + SCL    + F++ ++       ++  +IQ  N
Sbjct: 48  CFIDAGSCLTPDSVFFKSHITEAFQTQCKKCTEIQKQN 85


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = +2

Query: 266 LLEQRDSYSNKVSDLNKHKTRLEEDL 343
           L +++++ +NK++  +K +   EED+
Sbjct: 142 LFDEKNAGNNKITMKSKKEQNAEEDI 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,942
Number of Sequences: 438
Number of extensions: 1839
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)