Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J04
(474 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 40 9e-04
At1g67230.1 68414.m07652 expressed protein 36 0.014
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 35 0.024
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 34 0.057
At5g16210.1 68418.m01894 HEAT repeat-containing protein contains... 33 0.075
At1g68790.1 68414.m07863 expressed protein 33 0.075
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 33 0.099
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 33 0.099
At3g02930.1 68416.m00288 expressed protein ; expression support... 32 0.17
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 31 0.40
At3g61450.1 68416.m06882 syntaxin 73 (SYP73) identical to syntax... 31 0.53
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 30 0.92
At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase (ME... 29 1.6
At4g04340.3 68417.m00621 early-responsive to dehydration protein... 29 1.6
At4g04340.2 68417.m00620 early-responsive to dehydration protein... 29 1.6
At4g04340.1 68417.m00619 early-responsive to dehydration protein... 29 1.6
At3g54630.1 68416.m06044 expressed protein weak similarity to re... 29 2.1
At1g47900.1 68414.m05334 expressed protein 29 2.1
At5g04420.1 68418.m00435 kelch repeat-containing protein low sim... 28 2.8
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 28 2.8
At3g57280.1 68416.m06376 expressed protein contains Pfam profile... 28 2.8
At2g23360.1 68415.m02790 transport protein-related contains Pfam... 28 2.8
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 28 3.7
At2g30500.1 68415.m03715 kinase interacting family protein simil... 28 3.7
At1g54430.1 68414.m06209 hypothetical protein 28 3.7
At1g22882.1 68414.m02857 expressed protein 28 3.7
At5g07650.1 68418.m00876 formin homology 2 domain-containing pro... 27 4.9
At4g17750.1 68417.m02650 heat shock factor protein 1 (HSF1) / he... 27 4.9
At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pf... 27 6.5
At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ... 27 6.5
At5g13560.1 68418.m01566 expressed protein weak similarity to SP... 27 6.5
At1g79830.1 68414.m09326 expressed protein weak similarity to TA... 27 6.5
At5g61460.1 68418.m07712 structural maintenance of chromosomes (... 27 8.6
At5g15880.1 68418.m01858 expressed protein 27 8.6
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr... 27 8.6
At2g26790.1 68415.m03213 pentatricopeptide (PPR) repeat-containi... 27 8.6
At1g56080.1 68414.m06439 expressed protein 27 8.6
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 39.9 bits (89), Expect = 9e-04
Identities = 26/87 (29%), Positives = 43/87 (49%)
Frame = +2
Query: 188 NRISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLT 367
NR+ + RQL+E K + E+ +L ++ NK+S L K T ++DLSE +L
Sbjct: 1378 NRLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQ---NKISLLEKELTNCKKDLSEREKRLD 1434
Query: 368 KSEIQINNTKDDVNMCKTELQSLKNXH 448
++ + + N K EL+ K H
Sbjct: 1435 DAQQAQATMQSEFNKQKQELEKNKKIH 1461
Score = 26.6 bits (56), Expect = 8.6
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +2
Query: 251 EESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQ 430
EE ++ D Y +++ D + KT EDL + +LTK + + + +V T+++
Sbjct: 1514 EEKEKRIQILDKYVHQLKDEVRKKT---EDLKKKDEELTKERSERKSVEKEVGDSLTKIK 1570
Query: 431 SLKNXHVSESAMLE 472
K E A LE
Sbjct: 1571 KEKTKVDEELAKLE 1584
>At1g67230.1 68414.m07652 expressed protein
Length = 1132
Score = 35.9 bits (79), Expect = 0.014
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +2
Query: 197 SEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSE 376
+E+ Q+++C QQ +E+ L QR+S+ + +L++ K ++ +L + K E
Sbjct: 491 TELKEQIEKCRSQQELLQKEAEDLKAQRESFEKEWEELDERKAKIGNELKNITDQKEKLE 550
Query: 377 IQIN 388
I+
Sbjct: 551 RHIH 554
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 296 KVSDLNKHKTRL---EEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQSLK 439
++S++NK K L EE+ SEY T+ + QI + + + E + LK
Sbjct: 465 QLSEINKEKDELRVTEEERSEYLRLQTELKEQIEKCRSQQELLQKEAEDLK 515
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 35.1 bits (77), Expect = 0.024
Identities = 22/92 (23%), Positives = 45/92 (48%)
Frame = +2
Query: 194 ISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKS 373
+ + + ++ K + ++E ++ + + K+ D K + +EE+ SE K
Sbjct: 107 LKKANERISSLEKDKAKALDELKQAKKEAEQVTLKLDDALKAQKHVEEN-SEIE-KFQAV 164
Query: 374 EIQINNTKDDVNMCKTELQSLKNXHVSESAML 469
E I +++ K EL+++KN H S+SA L
Sbjct: 165 EAGIEAVQNNEEELKKELETVKNQHASDSAAL 196
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 33.9 bits (74), Expect = 0.057
Identities = 19/75 (25%), Positives = 42/75 (56%)
Frame = +2
Query: 206 SRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQI 385
S+ L E K+ T +E TL +++++ + + K KT+LE D+ +++ ++T +
Sbjct: 267 SKSLDESLKELT---KELQTLYKEKETVEAQQTKALKKKTKLELDVKDFQDRITGNIQSK 323
Query: 386 NNTKDDVNMCKTELQ 430
N+ + +N + E+Q
Sbjct: 324 NDALEQLNTVEREMQ 338
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 206 SRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEE 337
S QLQ+ S +++ + EQR+ N+ ++L+ +++E
Sbjct: 966 SEQLQQFSHVNKKALDQYVNFTEQREELQNRQAELDAGDEKIKE 1009
>At5g16210.1 68418.m01894 HEAT repeat-containing protein contains
Pfam profile PF02985: HEAT repeat
Length = 1180
Score = 33.5 bits (73), Expect = 0.075
Identities = 17/81 (20%), Positives = 40/81 (49%)
Frame = +2
Query: 218 QECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTK 397
+ K+ +E LL+ ++++ ++ NK L++DL + ++ + + +
Sbjct: 223 ESLKKEIERLSKEKDGLLKSKENFEEQIGAFNKSTESLQKDLRDREKQVQSLKQSSEHQR 282
Query: 398 DDVNMCKTELQSLKNXHVSES 460
++N C+ E+ SLK H+ S
Sbjct: 283 RNLNDCRAEITSLK-MHIEGS 302
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 33.5 bits (73), Expect = 0.075
Identities = 21/71 (29%), Positives = 38/71 (53%)
Frame = +2
Query: 197 SEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSE 376
SE+ R+L+E ++ E L+L+ +R+++ +K R EDL E+ KLT E
Sbjct: 202 SELERKLKEVETREKVHQREHLSLVTEREAHEAVF-----YKQR--EDLQEWEKKLTLEE 254
Query: 377 IQINNTKDDVN 409
+++ K +N
Sbjct: 255 DRLSEVKRSIN 265
Score = 27.1 bits (57), Expect = 6.5
Identities = 19/95 (20%), Positives = 39/95 (41%)
Frame = +2
Query: 188 NRISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLT 367
+RI E L+ +++ + L +Q D + L K + L++D + +
Sbjct: 478 SRIREEHESLRITKEERVEFLRLQSELKQQIDKVKQEEELLLKEREELKQDKERFEKEWE 537
Query: 368 KSEIQINNTKDDVNMCKTELQSLKNXHVSESAMLE 472
+ + N + N E + L+N +SE L+
Sbjct: 538 ALDKKRANITREQNEVAEENEKLRNLQISEKHRLK 572
>At4g14760.1 68417.m02271 M protein repeat-containing protein
contains Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 33.1 bits (72), Expect = 0.099
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +2
Query: 191 RISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTK 370
R SE+ L+ + EE L + S + +L ++LE D+S
Sbjct: 406 RFSELGASLRNLESLHSQSQEEQKVLTSELHSRIQMLRELEMRNSKLEGDISSKEENRNL 465
Query: 371 SEIQINNTKDDVNMCKTELQSLK 439
SE IN+T + + K E+ LK
Sbjct: 466 SE--INDTSISLEIQKNEISCLK 486
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 33.1 bits (72), Expect = 0.099
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = +2
Query: 194 ISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKS 373
IS++ + +E + T E L ++ NK+++ + LEE L++ + +
Sbjct: 950 ISDIISEKEEAQGRTATAEMEQEMLQKEASIQKNKLTEAHSTINSLEETLAQTESNMDSL 1009
Query: 374 EIQINNTKDDVNMCKTELQSLK 439
QI + K K EL+ LK
Sbjct: 1010 SKQIEDDKVLTTSLKNELEKLK 1031
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 32.3 bits (70), Expect = 0.17
Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Frame = +2
Query: 185 RNRISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSN--------KVSDLNKHKTRLEED 340
+N+ E+ ++L+E +K + C SL + ++ SN +++DL + LE
Sbjct: 312 QNKAKELEKRLEEANKLEK-CASVSLVSVTKQLEVSNSRLHDMESEITDLKEKIELLEMT 370
Query: 341 LSEYRTKLTKSEIQINNTKDDVNMCKTELQSLKN 442
++ + L KSE ++ +++ + + E + LKN
Sbjct: 371 VASQKVDLEKSEQKLGIAEEESSKSEKEAEKLKN 404
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/92 (17%), Positives = 45/92 (48%)
Frame = +2
Query: 194 ISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKS 373
+ + + + ++ +++ ++ + S K+ + + + + E+ + ++ ++
Sbjct: 96 LKKANELIASLENEKAKALDQLKEARKEAEEASEKLDEALEAQKKSLENFEIEKFEVVEA 155
Query: 374 EIQINNTKDDVNMCKTELQSLKNXHVSESAML 469
I+ K++ K EL+++KN H SESA L
Sbjct: 156 GIEAVQRKEEE--LKKELENVKNQHASESATL 185
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 31.1 bits (67), Expect = 0.40
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +2
Query: 263 TLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQSLKN 442
T LE + L K L+E + ++ + + E + K++ KTEL++L+
Sbjct: 408 TDLEALRNLEENYQQLINRKNDLDEQIKRFKDRQGEIETSSSKYKNETTSLKTELRALQE 467
Query: 443 XHVS 454
HV+
Sbjct: 468 KHVN 471
>At3g61450.1 68416.m06882 syntaxin 73 (SYP73) identical to syntaxin
73 (AtSYP73) (Swiss-Prot:Q94KK5) [Arabidopsis thaliana]
Length = 263
Score = 30.7 bits (66), Expect = 0.53
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 266 LLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQSLKN 442
+ E D+ N D+N+ R E + E TK+ K+ + +T + T+L+S +N
Sbjct: 182 IAEGLDTLKNMAQDINEELDRQEPLMDEIDTKIDKAATDLKSTNVRLKDTVTKLRSSRN 240
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 29.9 bits (64), Expect = 0.92
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Frame = +2
Query: 191 RISEVSRQLQECSKQQTTCME---ESLTLLE-QRDSYSNKVSDLNKHKTRLEEDLSEYRT 358
R+ E + LQ+ + + T +E E+ T E ++ S ++ L H L++ L+ R
Sbjct: 221 RLQEYNTSLQQYNTKLQTDLEVAREAHTRAEKEKSSILENLTTLRGHSKSLQDQLASSRV 280
Query: 359 KLTKSEIQINNTKDDVNMCKTELQSL---KNXHVSESAML 469
++ Q ++ +VN ++ELQ + ++ HV +S L
Sbjct: 281 SQDEAVKQKDSLLMEVNNLQSELQQVRDDRDRHVVQSQKL 320
>At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase
(METII) nearly identical to cytosine-5 methyltransferase
(METII) [Arabidopsis thaliana] GI:6523846
Length = 1519
Score = 29.1 bits (62), Expect = 1.6
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 215 LQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNT 394
L E +K TC E+ L+ RD SNK+ HK L +K+ S+ ++
Sbjct: 236 LDETAKNHETCFVENRVLVSLRDHESNKI-----HKALSNVALRIDESKVVTSDHLVDGA 290
Query: 395 KD-DVNMCK 418
+D DV K
Sbjct: 291 EDEDVKYAK 299
>At4g04340.3 68417.m00621 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 772
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 290 SNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQI 385
+NK++DL KT+L+ L Y+ K T++ QI
Sbjct: 242 ANKLADLVSKKTKLQNWLDYYQLKYTRNNSQI 273
>At4g04340.2 68417.m00620 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 772
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 290 SNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQI 385
+NK++DL KT+L+ L Y+ K T++ QI
Sbjct: 242 ANKLADLVSKKTKLQNWLDYYQLKYTRNNSQI 273
>At4g04340.1 68417.m00619 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 772
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 290 SNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQI 385
+NK++DL KT+L+ L Y+ K T++ QI
Sbjct: 242 ANKLADLVSKKTKLQNWLDYYQLKYTRNNSQI 273
>At3g54630.1 68416.m06044 expressed protein weak similarity to
retinoblastoma-associated protein HEC [Homo sapiens]
GI:2501873
Length = 568
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 308 LNKHKTRLEEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQSL 436
L HK+ + + R+ L ++QIN+ ++ + + K E Q L
Sbjct: 422 LQHHKSEMASKIESKRSLLGSIQLQINDLEEKMKLVKKETQEL 464
>At1g47900.1 68414.m05334 expressed protein
Length = 1054
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +2
Query: 275 QRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQSLKNXHVS 454
Q +Y N+V + EE + Y K+ + E Q+ +DV +L V+
Sbjct: 72 QVKTYENQVESYEEQVKDFEEQIDAYDEKVHEYEEQVQKLNEDVEDLNEKLSVANEEIVT 131
Query: 455 ESAMLE 472
+ A+++
Sbjct: 132 KEALVK 137
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/84 (19%), Positives = 39/84 (46%)
Frame = +2
Query: 188 NRISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLT 367
++ ++ + E K+ +E L D+ S + + + ++ E+ S
Sbjct: 209 SKTKQIEKMTMEFEKRMCDYEQELLRSAADSDALSRTLQERSNMLVKVSEEKS------- 261
Query: 368 KSEIQINNTKDDVNMCKTELQSLK 439
+++ +I K ++ MC+ E++SLK
Sbjct: 262 RADAEIETLKSNLEMCEREIKSLK 285
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 212 QLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQI 385
Q++ Q + E+ EQ D+Y KV + + +L ED+ + KL+ + +I
Sbjct: 72 QVKTYENQVESYEEQVKDFEEQIDAYDEKVHEYEEQVQKLNEDVEDLNEKLSVANEEI 129
>At5g04420.1 68418.m00435 kelch repeat-containing protein low
similarity to rngB protein, Dictyostelium discoideum,
PIR:S68824; contains Pfam profile PF01344: Kelch motif
Length = 514
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +2
Query: 269 LEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQSLKNXH 448
L +RD N++ + + K LE ++E + + K +I+ ELQS++
Sbjct: 393 LPERD-IRNRIDTIKEEKRALESSIAETQVENAKLREKIDEVNSSHTELSQELQSVEGQL 451
Query: 449 VSE 457
+SE
Sbjct: 452 ISE 454
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 290 SNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTKD 400
S+ VSD K E+DL E + L K +I+ T+D
Sbjct: 30 SSPVSDKGKETKSFEKDLMEMQAMLEKMKIEKEKTED 66
>At3g57280.1 68416.m06376 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 226
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -2
Query: 335 PLVLFYVYLSRLLCWSNYRVVRVTLTILPCMSFAVLNTLVVAY 207
P +L LS ++ W N+ +T + P FAV++ ++ +
Sbjct: 159 PYILGQAVLSAVVFWKNFTAYSMTKKLFPAGVFAVISACMLCF 201
>At2g23360.1 68415.m02790 transport protein-related contains Pfam
PF05911: Plant protein of unknown function (DUF869)
profile; weak similarity to Intracellular protein
transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]
Length = 886
Score = 28.3 bits (60), Expect = 2.8
Identities = 19/84 (22%), Positives = 40/84 (47%)
Frame = +2
Query: 191 RISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTK 370
R+ + +L K+ E+ L + + + V DLN+ + R+E D + + L
Sbjct: 118 RLIVIKTELAGSGKRLAEAEGENAQLSKALLAKNKTVEDLNRERDRIEVDFNSLVSSLES 177
Query: 371 SEIQINNTKDDVNMCKTELQSLKN 442
E + + + +V + + EL+ L+N
Sbjct: 178 KEKENVSLRYEVRVLEKELE-LRN 200
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +2
Query: 275 QRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQSLKNXHVS 454
Q +S +VSDL+ EE+ +K ++ ++ T++ + EL LK+ H
Sbjct: 162 QLESSKQQVSDLSASLKAAEEENKAISSKNVETMNKLEQTQNTIQELMAELGKLKDSHRE 221
Query: 455 ESAML 469
+ + L
Sbjct: 222 KESEL 226
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/88 (22%), Positives = 36/88 (40%)
Frame = +2
Query: 185 RNRISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKL 364
R + SE+S ++ Q L EQ +S V++LN+ EE+ K+
Sbjct: 220 REKESELSSLVEVHETHQRDSSIHVKELEEQVESSKKLVAELNQTLNNAEEEKKVLSQKI 279
Query: 365 TKSEIQINNTKDDVNMCKTELQSLKNXH 448
+ +I ++ + +E LK H
Sbjct: 280 AELSNEIKEAQNTIQELVSESGQLKESH 307
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 269 LEQR-DSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQSLKNX 445
LE R +S +V +LN++ EE+ ++++ I+I + + +E + LK
Sbjct: 578 LEARVESAEEQVKELNQNLNSSEEEKKILSQQISEMSIKIKRAESTIQELSSESERLKGS 637
Query: 446 HVSE 457
H +
Sbjct: 638 HAEK 641
>At2g30500.1 68415.m03715 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 517
Score = 27.9 bits (59), Expect = 3.7
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +2
Query: 212 QLQECSKQQTTCMEESLTLLEQ-RDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQIN 388
++ + ++++ ++ L L ++ D+Y NK++ K +L+E L+ +T L + +I
Sbjct: 291 EIGKAAEEKLKSLQHELELAQRDADTYINKLNAEKKEVLKLQERLAMVKTSLQDRDNEIR 350
Query: 389 NTKDDVNMCKTELQSLKNXHVSE-SAMLE 472
K V+ + ++ K E S MLE
Sbjct: 351 ALKTAVSDAEQKIFPEKAQIKGEMSKMLE 379
>At1g54430.1 68414.m06209 hypothetical protein
Length = 1639
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 223 VFKTANDMHGRIVNVTRTTR 282
+F TAN++H RI V RTT+
Sbjct: 401 IFDTANEVHNRISAVKRTTK 420
>At1g22882.1 68414.m02857 expressed protein
Length = 660
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +2
Query: 185 RNRISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKL 364
RN +S + ++ ++ S +E +D+Y K S++NK T ++ S+Y
Sbjct: 95 RNDDVNLSEESEDKEQEAEISSTVSGNDIESKDTYLLKQSEINKKDTGIDAG-SKYDDFP 153
Query: 365 TKSEIQINNTKDD 403
KSEI T +D
Sbjct: 154 KKSEINNTGTWND 166
>At5g07650.1 68418.m00876 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 815
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 275 QRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQSL 436
Q S + + + K +L+++L+ T SE+ N KD +++ +TE+ ++
Sbjct: 354 QVKSLAQNIQAIIKRLEKLKQELTASETDGPASEVFCNTLKDFISIAETEMATV 407
>At4g17750.1 68417.m02650 heat shock factor protein 1 (HSF1) / heat
shock transcription factor 1 (HSTF1) identical to heat
shock transcription factor 1 (HSF1) SP:P41151 from
[Arabidopsis thaliana] ;contains Pfam profile: PF00447
HSF-type DNA-binding domain
Length = 495
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +2
Query: 203 VSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKS 373
+ ++++ + + M+E + L +Q+ + NK+ L KH +E+ + + L K+
Sbjct: 181 LEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQVMEQRQQQIMSFLAKA 237
>At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 512
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 209 RQLQECSKQQTTCMEESLTLLEQRDSY-SNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQI 385
++ E + +C EE +L + SN++ LN H +S Y+TKL ++E +
Sbjct: 14 KEEDEEEEANVSCREEQEEVLVALVEHRSNEIERLNNH-------ISNYQTKLIEAERSL 66
Query: 386 NNTK 397
N+K
Sbjct: 67 QNSK 70
>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
finger domain-containing protein-related contains Pfam
profiles PF03468: XS domain, weak hit to PF03470: XS
zinc finger domain
Length = 625
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 272 EQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKS 373
+Q + + NK+S NKH LEE L KL ++
Sbjct: 446 QQLNYFKNKLSKQNKHAKVLEESLEIMSEKLRRT 479
>At5g13560.1 68418.m01566 expressed protein weak similarity to
SP|O42184 Restin (Cytoplasmic linker protein-170)
(CLIP-170) {Gallus gallus}
Length = 679
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 281 DSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINNTKDDVNMCKTELQSLKNXHVSE 457
D N+VS+ K LEE+ +Y TK+ + ++N K+ + +++L + V E
Sbjct: 504 DQGDNQVSNPRKI---LEEEYIDYETKIITTFSIVDNVKEQFQVLQSKLDKKDDRRVKE 559
>At1g79830.1 68414.m09326 expressed protein weak similarity to TATA
element modulatory factor (TMF) (Swiss-Prot:P82094)
[Homo sapiens]
Length = 927
Score = 27.1 bits (57), Expect = 6.5
Identities = 20/91 (21%), Positives = 38/91 (41%)
Frame = +2
Query: 185 RNRISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKL 364
+N+ S+ + L+E + M E L +++ + ++ L EE+ TKL
Sbjct: 428 QNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKL 487
Query: 365 TKSEIQINNTKDDVNMCKTELQSLKNXHVSE 457
E ++ + K D + LQ H +E
Sbjct: 488 QSEENKVESIKRDKTATEKLLQETIEKHQAE 518
>At5g61460.1 68418.m07712 structural maintenance of chromosomes
(SMC) family protein very strong similarity to SMC-like
protein (MIM) [Arabidopsis thaliana] GI:5880614;
contains Pfam profile PF02463: RecF/RecN/SMC N terminal
domain
Length = 1057
Score = 26.6 bits (56), Expect = 8.6
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 221 ECSKQQTT---CMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTKLTKSEIQINN 391
E SK+Q CM E + KV L KH+++ E+ LT E+++++
Sbjct: 646 EASKEQNEINQCMRRKREAEENLEELELKVRQLKKHRSQAEK-------VLTTKELEMHD 698
Query: 392 TKDDVNMCKTELQSLKNXHVSE 457
K N E+++L + V+E
Sbjct: 699 LK---NTVAAEIEALPSSSVNE 717
>At5g15880.1 68418.m01858 expressed protein
Length = 348
Score = 26.6 bits (56), Expect = 8.6
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +2
Query: 212 QLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRT---KLTKSEIQ 382
QL S + TLLE+ +Y N +S +T++EE +E + KL + E
Sbjct: 85 QLDSHSATREQAHMREQTLLEENSAYENAISTC---ETKIEEKRNEADSLLRKLKELEAV 141
Query: 383 INNTKDDVNMCKTELQSLKNXHVSESAM 466
N K + + + L + ++ SE+ +
Sbjct: 142 EENLKTEQDNAQASLDARQSKSSSETVI 169
>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
protein-related contains weak hit to Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger); weak
similarity to RING finger protein 8 (Swiss-Prot:O76064)
[Homo sapiens]
Length = 738
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/54 (20%), Positives = 28/54 (51%)
Frame = +2
Query: 200 EVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLEEDLSEYRTK 361
E S++ ++C K+ ++ + L ++ + K+ LN+ ++ ++ EY K
Sbjct: 516 EASKKEKKCLKKLLAWEKQKMKLQDEITAEKEKIKALNRALAQITQEEKEYEAK 569
>At2g26790.1 68415.m03213 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 799
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 356 TKLTKSEIQ--INNTKDDVNMCKTELQSLKNXHVS 454
+KLT+ +Q +N+T+DD N+ + L+ LK VS
Sbjct: 52 SKLTQHGLQRLLNSTRDDPNLALSFLRQLKEHGVS 86
>At1g56080.1 68414.m06439 expressed protein
Length = 310
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +2
Query: 188 NRISEVSRQLQECSKQQTTCMEESLTLLEQRDSYSNKVSDLNKHKTRLE 334
+R+S R E ++E++ L ++RDS + L + +LE
Sbjct: 67 DRVSSFERLYHEADSSLKNVVDENMKLTQERDSLAITAKKLGRDYAKLE 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,243,862
Number of Sequences: 28952
Number of extensions: 138909
Number of successful extensions: 435
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -