Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J03
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0467 - 18479199-18479543,18481145-18481417                       72   4e-13
08_02_0274 - 15192670-15192983,15193110-15193200,15193295-151936...    31   0.48 
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073...    29   1.9  
04_01_0542 - 7005972-7007443,7008568-7008766,7008780-7008855,700...    29   2.5  
11_05_0074 + 18850567-18851095,18851249-18851274,18851353-188516...    28   5.9  
09_01_0069 - 1010888-1011226,1011412-1011600                           28   5.9  

>07_03_0467 - 18479199-18479543,18481145-18481417
          Length = 205

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 42/122 (34%), Positives = 68/122 (55%)
 Frame = +1

Query: 22  LQVRNYADAPKGDEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPG 201
           +Q R    A    ++ + F    K     + V  + VP+ +G  G+LP HV T+A L+PG
Sbjct: 61  MQPRPPTPAAIPSKLTVNFVLPYKSEIANKEVDMVIVPATTGQMGVLPGHVSTIAELKPG 120

Query: 202 VVTILENDGKQNKIFVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQSEFNS 381
           V+++ E +    K FVSSG   V+ +S   ++A EA PL+ ID +A Q+ L++  ++  S
Sbjct: 121 VLSVHEGNDI-TKYFVSSGFAFVHANSIADIVAVEAVPLDQIDPAAVQQGLAEFNAKLGS 179

Query: 382 AS 387
           AS
Sbjct: 180 AS 181


>08_02_0274 -
           15192670-15192983,15193110-15193200,15193295-15193603,
           15193859-15193944,15196034-15196088,15196689-15196757,
           15197027-15197074,15198090-15198203,15198464-15198526,
           15199236-15199427,15199519-15199643,15199723-15199779,
           15200209-15200332,15200478-15200543,15200656-15200738,
           15200916-15201036,15201663-15201773,15201841-15201936,
           15202032-15202107,15202878-15203016,15203283-15203346,
           15203454-15203527,15203845-15203923,15204473-15204547
          Length = 876

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
 Frame = +1

Query: 19  RLQVRNYADAPKGDEMALTFAAGNKVFYDKQV---VKQIDVP-SFSGAFGILPKHVPTLA 186
           R+  RN+A A   ++  L     N     K+    +K++D         G    H+P   
Sbjct: 272 RMYFRNFATAEAAEDEELAIFLKNDDILAKEARLKIKRVDPTLDMEADAGDDYIHLPDHG 331

Query: 187 VLRPGVVTILENDGKQNKIFVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQ 366
           ++R G    ++NDG+  +  +S     +N  ++V VL   +  +E  D     EA+++++
Sbjct: 332 IIRDGSKETIDNDGELARRTLSQ---DLNRHAAV-VLEGRSSDVELTDTKTVAEAIARSK 387

Query: 367 SEFNSAS 387
            E  S+S
Sbjct: 388 KEPPSSS 394


>07_03_1343 -
           25905475-25905678,25907025-25907167,25907273-25907366,
           25907526-25907687,25907884-25907952,25908631-25908843,
           25909054-25909113,25909294-25909382,25909745-25910063
          Length = 450

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 166 KHVPTLAVLRPGVVTILENDGKQNKIF 246
           KH P   + R G +++ E DGK+NK++
Sbjct: 233 KHPPGDEIYRSGTLSMFEVDGKKNKVY 259


>04_01_0542 -
           7005972-7007443,7008568-7008766,7008780-7008855,
           7009615-7009925
          Length = 685

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 190 LRPGVVTILENDGKQNKIFVSS--GTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKA 363
           LR G VT    D + N   VS+  G +TV DDS+V+  AEE  P   +  S+ +  ++KA
Sbjct: 426 LRGGSVT----DSQLNSHCVSAIAGLLTVVDDSAVEQQAEEVLPTICV-ASSLETVMNKA 480

Query: 364 QSE 372
             E
Sbjct: 481 PEE 483


>11_05_0074 +
           18850567-18851095,18851249-18851274,18851353-18851645,
           18851898-18852699,18852874-18853022,18853105-18853393,
           18853479-18853517,18853623-18853661
          Length = 721

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +1

Query: 112 VVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTI--LEND--GKQNKIF 246
           ++ Q D   F G    + KH P +A L P VVTI  L+N+  G  N I+
Sbjct: 533 ILGQHDGKPFLGPTNYIVKHAPEVAFLDPQVVTITNLQNNRQGMVNYIY 581


>09_01_0069 - 1010888-1011226,1011412-1011600
          Length = 175

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 264 NCARRYEDF-ILFPIIFKNCNNTRSKNSQGR 175
           NC+R ++   +LFP   K+   TR KN +GR
Sbjct: 136 NCSRVFDPLDLLFPFSPKSERKTRDKNDRGR 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,156,069
Number of Sequences: 37544
Number of extensions: 181780
Number of successful extensions: 433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)