Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J03
         (562 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   2.2  
AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin bi...    24   3.9  
AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin b...    24   3.9  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   9.0  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 343  VQHYGQCSPEGEPLRL 296
            V +Y Q  P+G PLRL
Sbjct: 1142 VPYYAQSQPQGSPLRL 1157


>AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 349 PPVQHYGQCSPEGEPLRLKPE-LRSHHLL*LCQT 251
           PP +   + +PE EP+R  P  LR +  L   QT
Sbjct: 120 PPFRPIPKPTPEAEPVRFDPSVLRRNFALKTAQT 153


>AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 568

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 349 PPVQHYGQCSPEGEPLRLKPE-LRSHHLL*LCQT 251
           PP +   + +PE EP+R  P  LR +  L   QT
Sbjct: 125 PPFRPIPKPTPEAEPVRFDPSVLRRNFALKTAQT 158


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 129 INLFDNLFVIKDLITRSEGQCHFVTF 52
           I++F+N F   + I+  E  C F +F
Sbjct: 361 ISMFNNSFHCSNFISLDEAVCSFSSF 386


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 463,924
Number of Sequences: 2352
Number of extensions: 8103
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52563375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)