Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J03
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 154 GILPKHVPTLAVLRPGVVTILENDGKQNKIFVSSGTI 264
           G+   HVP+  + RP +V     DG      ++  T+
Sbjct: 99  GVKMLHVPSDHIWRPDIVLYNNADGNYEVTLMTKATV 135


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 154 GILPKHVPTLAVLRPGVVTILENDGKQNKIFVSSGTI 264
           G+   HVP+  + RP +V     DG       +  TI
Sbjct: 99  GVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATI 135


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 136 SFSGAFGILPKHVPT 180
           ++SG+   LPKH+PT
Sbjct: 371 TYSGSPTELPKHLPT 385


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +1

Query: 154 GILPKHVPTLAVLRPGVVTILENDGKQNKIFVSSGTI 264
           G+   HVP+  + RP +V     DG       +  T+
Sbjct: 95  GVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATL 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,733
Number of Sequences: 438
Number of extensions: 1985
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)