Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J01
         (744 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC007679-1|AAX93069.1|  922|Homo sapiens unknown protein.              31   4.4  
X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec...    30   7.6  
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein...    30   7.6  
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re...    30   7.6  

>AC007679-1|AAX93069.1|  922|Homo sapiens unknown protein.
          Length = 922

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -1

Query: 483 TVVLVAHSAGLDLRAVSDRGVGGELDNSAGVLGIVGVDIQASTDNSSALHDDLVTVSRSS 304
           T+ ++A S G+ ++ +SDRG+ G      G  GI  +  + +TD    L+  +V  + SS
Sbjct: 565 TIGVLAQSDGVPVQELSDRGI-GVFSTGTGASGIQSLSREVNTDLGELLNGRIVHDNFSS 623


>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
            (AA -19 to 4525) protein.
          Length = 4544

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 381  VGVDIQASTDNSSALHDDLVTVSRSSRNAV--QDFDRQNVAQVERVEVNRILGVAFYW-- 214
            VG+D  A  D    +   L T+SR+ R+    +D     + +VE + V+ I G   YW  
Sbjct: 1925 VGIDFHAENDTIYWVDMGLSTISRAKRDQTWREDVVTNGIGRVEGIAVDWIAG-NIYWTD 1983

Query: 213  -GFGALE 196
             GF  +E
Sbjct: 1984 QGFDVIE 1990


>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
            lipoprotein-related protein 1 (alpha-2-macroglobulin
            receptor) protein.
          Length = 4544

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 381  VGVDIQASTDNSSALHDDLVTVSRSSRNAV--QDFDRQNVAQVERVEVNRILGVAFYW-- 214
            VG+D  A  D    +   L T+SR+ R+    +D     + +VE + V+ I G   YW  
Sbjct: 1925 VGIDFHAENDTIYWVDMGLSTISRAKRDQTWREDVVTNGIGRVEGIAVDWIAG-NIYWTD 1983

Query: 213  -GFGALE 196
             GF  +E
Sbjct: 1984 QGFDVIE 1990


>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
            protein protein.
          Length = 4544

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 381  VGVDIQASTDNSSALHDDLVTVSRSSRNAV--QDFDRQNVAQVERVEVNRILGVAFYW-- 214
            VG+D  A  D    +   L T+SR+ R+    +D     + +VE + V+ I G   YW  
Sbjct: 1925 VGIDFHAENDTIYWVDMGLSTISRAKRDQTWREDVVTNGIGRVEGIAVDWIAG-NIYWTD 1983

Query: 213  -GFGALE 196
             GF  +E
Sbjct: 1984 QGFDVIE 1990


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,400,935
Number of Sequences: 237096
Number of extensions: 2126230
Number of successful extensions: 3673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3673
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)