Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I24
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   192   1e-49
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   192   1e-49
At5g35753.1 68418.m04282 expressed protein                             27   7.7  

>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  192 bits (469), Expect = 1e-49
 Identities = 94/180 (52%), Positives = 118/180 (65%)
 Frame = +1

Query: 82  LKLXXTNNTSSRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 261
           +K   +N    RYQVKF+ RR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  Q
Sbjct: 4   VKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQ 63

Query: 262 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 441
           +  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG                     
Sbjct: 64  IVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNV 123

Query: 442 XXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPXY 621
                +++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF  +
Sbjct: 124 EATGEDFSVEPTDS-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182


>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  192 bits (469), Expect = 1e-49
 Identities = 94/180 (52%), Positives = 118/180 (65%)
 Frame = +1

Query: 82  LKLXXTNNTSSRYQVKFKXRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 261
           +K   +N    RYQVKF+ RR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  Q
Sbjct: 4   VKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQ 63

Query: 262 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 441
           +  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG                     
Sbjct: 64  IVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNV 123

Query: 442 XXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPXY 621
                +++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF  +
Sbjct: 124 EATGEDFSVEPTDS-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182


>At5g35753.1 68418.m04282 expressed protein
          Length = 592

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 106 TSSRYQVKFKXRREGKTDYYARKRL-VVQDKNKYNTPKYRLIVRLSNKDVTCQ 261
           T+    +  + RR G+ DYY +KRL        Y   +Y  + +  NK ++C+
Sbjct: 68  TTYEVYIASQSRRSGEIDYYLQKRLDTFWTVCTYCKVQYEYLRKYVNKRLSCK 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,133,415
Number of Sequences: 28952
Number of extensions: 256318
Number of successful extensions: 575
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)