Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I23
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   6.3  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   6.3  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   8.3  

>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 112 IKLIP*SFTKSHFTVVFYVKNGILLSVLFRS*SNSCFLVNI 234
           I L P +F+KS F +   +KN +LL   F S     FL ++
Sbjct: 47  IALNPCNFSKSLFWLRKKIKNSVLLKTSFDSNETIFFLYSL 87


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 40  STLVVHLFIVKSLNXFKHCNYNYIIKLI 123
           S+ ++ ++   SLN   HC  N ++KLI
Sbjct: 207 SSSILFVYDYSSLNPTYHCESNVVLKLI 234


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 290 ELLQSCALHSTCIKNIITYFLI 355
           ELL S  L   CIK+ +T +L+
Sbjct: 132 ELLSSSQLSDICIKDFVTSYLV 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,121
Number of Sequences: 5004
Number of extensions: 34656
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)