Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I23
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8091| Best HMM Match : C1_4 (HMM E-Value=1.3)                       28   6.5  
SB_3385| Best HMM Match : 3_5_exonuc (HMM E-Value=0.0015)              28   6.5  
SB_49327| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   8.6  

>SB_8091| Best HMM Match : C1_4 (HMM E-Value=1.3)
          Length = 308

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 326 CRYYVERSSEVAPEGATIFIVLQQHMMVSE 237
           CR Y+   SEV P+     I  + H++V E
Sbjct: 20  CRQYIFTVSEVVPDRVVAEIAFESHLVVDE 49


>SB_3385| Best HMM Match : 3_5_exonuc (HMM E-Value=0.0015)
          Length = 437

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 589 LVSTWPWLRDLHFDVQSTSAFCLLMFSVFIPKQNQ 485
           L+ T  W +DLH   +S  A C +     + K++Q
Sbjct: 258 LIDTCHWAKDLHCMPRSLQAMCAIFLGEHLSKRHQ 292


>SB_49327| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1196

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 582 VPGRGCEICTLMCNXLLLSVYSCLVFLFRN-KIRFSCMKAYTK 457
           V G G EI T++C  LLL     L+F+++  K  F   KAY +
Sbjct: 709 VTGDGLEIATIVCKVLLL--IFVLIFMYQEFKKIFKQRKAYLR 749


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,223,153
Number of Sequences: 59808
Number of extensions: 225358
Number of successful extensions: 474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)