Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I23
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-6|AAA96194.1|  147|Caenorhabditis elegans Hypothetical pr...    34   0.088
Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>U53338-6|AAA96194.1|  147|Caenorhabditis elegans Hypothetical
           protein C05E11.2 protein.
          Length = 147

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 555 TLMCNXLLLSVYSCL-VFLFRNKIRFSCMKAYTKSYLII*CWPIILLGTF 409
           T M    L+ +YSC+ V+L  N    + +  YT  +++I CW   L G +
Sbjct: 75  TFMIKCFLILIYSCIIVYLSDNPANRNTVAVYTLIFVLIHCWEQFLYGFY 124


>Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical
           protein F57B1.9a protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 567 CEICTLMCNXLLLSVYSCLVFLFRN 493
           C    L CN L+++V  C VF FRN
Sbjct: 136 CHYTILFCN-LVIAVQRCFVFFFRN 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,032,452
Number of Sequences: 27780
Number of extensions: 192079
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)