Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I23
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    32   0.25 
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP...    30   1.3  
At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containi...    27   7.1  

>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
           MAP3K epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1368

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +1

Query: 64  IVKSLNXFKHCNYNYIIKLIP*SFTKSHFTVVF-YVKNGILLSVL 195
           I++ ++  K+ N+  I+K +  S TK+H  ++  YV+NG L +++
Sbjct: 64  IMQEIDLLKNLNHKNIVKYLGSSKTKTHLHIILEYVENGSLANII 108


>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
           epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1367

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +1

Query: 64  IVKSLNXFKHCNYNYIIKLIP*SFTKSHFTVVF-YVKNGILLSVL 195
           I++ ++  K+ N+  I+K +    TK+H  ++  YV+NG L +++
Sbjct: 64  IMQEIDLLKNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANII 108


>At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 857

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 135 YEKSFHCCVLREKWNITFSLISLLIKQLFSCK 230
           Y K  HC ++R   ++   L S LI   F C+
Sbjct: 358 YCKQIHCYIMRHSISLDIFLTSALIDAYFKCR 389


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,848,663
Number of Sequences: 28952
Number of extensions: 158884
Number of successful extensions: 290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)