Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I21
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52499| Best HMM Match : COX5A (HMM E-Value=0)                      149   2e-36
SB_39596| Best HMM Match : TTL (HMM E-Value=0)                         30   1.5  
SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)               28   4.6  
SB_56875| Best HMM Match : LON (HMM E-Value=0)                         28   6.1  
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)                   28   6.1  
SB_41990| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)         28   6.1  
SB_56923| Best HMM Match : PT (HMM E-Value=0.95)                       28   6.1  
SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_52499| Best HMM Match : COX5A (HMM E-Value=0)
          Length = 208

 Score =  149 bits (361), Expect = 2e-36
 Identities = 70/107 (65%), Positives = 83/107 (77%), Gaps = 1/107 (0%)
 Frame = +3

Query: 144 PVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYAL 323
           PVES+E FD R+EAYF+R DID WE+R+G+N+L G DLVP+PKII A  HACRR+NDY  
Sbjct: 104 PVESEEAFDARWEAYFSRPDIDAWELRRGLNELYGHDLVPEPKIINAMFHACRRLNDYGT 163

Query: 324 AVRFIEACKDK-CGNKVNEIYPYIIQEIKPTLTELGIDTPEELGYDK 461
            VR +EA KDK  GNK  EIYPYI+Q+ KP + ELGI TPEELG  K
Sbjct: 164 TVRILEAVKDKAAGNK--EIYPYILQQCKPVMEELGILTPEELGLAK 208


>SB_39596| Best HMM Match : TTL (HMM E-Value=0)
          Length = 808

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 47  EIRIRCVCKCP*KI-ISSCREGQRRICTEITRRSSGK 154
           ++RI  + KC   + I  CREG  R CTE+ R  S K
Sbjct: 434 DLRIYVLVKCLDPLEIYVCREGMGRFCTEVYRPPSQK 470


>SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)
          Length = 425

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 461 LIVAKLLRCVNTQFGESRLDLLNDVWVDFIHFVSTFVFAGFYKPD 327
           L++  +L  +N+   +SRL + +D  V F  F  TF F   Y PD
Sbjct: 364 LVLVVILVALNSGLIKSRLVVHDDAVVWFAKFSQTFSFVCGYMPD 408


>SB_56875| Best HMM Match : LON (HMM E-Value=0)
          Length = 925

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 212 LGNPQRNE*PLWYGSRSRPKDYQSCPSCMQTS 307
           +GN + N  P W   RS+ KD QS P    T+
Sbjct: 846 IGNVKSNPKPFWQFIRSQRKDSQSMPPLKATN 877


>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
          Length = 1104

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 389 VWVDFIHFVSTFVFAGFYKPDCKGIIIDSSACMKGSFDNL 270
           +W D  HF S      + +  C G I D+S C+K    +L
Sbjct: 445 LWKDKSHFKSALASLLYNRASCLGRIGDASGCVKDCTSSL 484


>SB_41990| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
          Length = 455

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 212 LGNPQRNE*PLWYGSRSRPKDYQSCPSCMQTS 307
           +GN + N  P W   RS+ KD QS P    T+
Sbjct: 376 IGNVKSNPKPFWQFIRSQRKDSQSMPPLKATN 407


>SB_56923| Best HMM Match : PT (HMM E-Value=0.95)
          Length = 441

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +3

Query: 420 ELGIDTPEELGYDKPELALES 482
           ELG+D  EEL  D PEL L S
Sbjct: 242 ELGVDLQEELNRDAPELMLLS 262


>SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 270 LGRERDPYHRGHSFLCG 220
           +GRE  PY + HS++CG
Sbjct: 248 IGREIQPYSKPHSYVCG 264


>SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 133 HTEVQWKVMKNSITDMKHISTEKTLMVGKSAKE 231
           HT  +    KNS T +KH+    T  +G SAKE
Sbjct: 176 HTGARKAFTKNSRTLLKHVKEIATKSMGDSAKE 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,790,891
Number of Sequences: 59808
Number of extensions: 343306
Number of successful extensions: 736
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)