Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I19
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0701 - 35620559-35620777,35620872-35620949,35621038-356211...   132   2e-31
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921...    32   0.46 
12_01_0143 + 1096622-1096882,1096951-1097264,1097361-1097382           29   4.2  
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    29   4.2  
12_01_0090 + 717524-719080                                             28   5.6  
10_01_0042 + 562246-563550                                             28   5.6  
08_02_0696 + 20137167-20137485,20137601-20137740,20137841-20137951     28   5.6  

>03_06_0701 -
           35620559-35620777,35620872-35620949,35621038-35621191,
           35621279-35621391,35621487-35621586,35622193-35622389,
           35622470-35622526,35622630-35622734,35622824-35622931,
           35623651-35623848,35624022-35624024
          Length = 443

 Score =  132 bits (320), Expect = 2e-31
 Identities = 61/120 (50%), Positives = 86/120 (71%)
 Frame = +3

Query: 288 IQEAIDQLLALEKQTRTGADMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQ 467
           +  AI+ LL +EKQ R   D+  T +  + +V++ ++A  W  LND IVVLSKRR QLKQ
Sbjct: 8   LDAAIESLLNVEKQMRLAGDVAGTRKAAIDIVELCYKAGAWKTLNDQIVVLSKRRGQLKQ 67

Query: 468 AVVKMVQECYTYVDKTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNV 647
           A+  MVQ+   Y+D TPD +T+I+LI+TL +++ GKIYVE+ERARL   LAKI+EE+G +
Sbjct: 68  AITAMVQKAMEYIDLTPDMDTRIELIKTLSSVSAGKIYVEIERARLIKRLAKIKEEQGQI 127


>12_02_0792 -
           23191120-23191313,23191419-23191775,23192027-23192108,
           23192186-23193097,23193190-23193346,23193540-23193694,
           23194667-23194819,23195334-23195627,23195711-23195896,
           23196062-23196662,23196868-23196992,23197101-23197197,
           23197299-23197411,23198129-23198233
          Length = 1176

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
 Frame = +3

Query: 177 DIGGLDASGKIIKMEVDYSATCDEKLPLW-----KSWAAQGKIQEAIDQLL-ALEKQTRT 338
           D+   + +  + K+EVD S +       W     K  + Q K   A ++   A EK+TR 
Sbjct: 495 DMDEEEKTAPVEKVEVDLSLSAHANARRWYELKKKQESKQEKTVTAHEKAFKAAEKKTRL 554

Query: 339 GADMVSTSRILVTVVQIY-FEAKNWSALNDHIVVLSKRRSQLKQAVVK 479
                 T   +  + +++ FE  NW   +++ +++S R +Q  + +VK
Sbjct: 555 QLAQEKTVAAITHMRKVHWFEKFNWFISSENYLIISGRDAQQNELIVK 602


>12_01_0143 + 1096622-1096882,1096951-1097264,1097361-1097382
          Length = 198

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
 Frame = +3

Query: 255 PLWKSWAAQGKIQE-----AIDQLLALEK 326
           P+WK +  QGK QE     A++QLL LEK
Sbjct: 91  PIWKWFTTQGKEQEDAYEAAMEQLLVLEK 119


>09_03_0058 + 11950668-11950701,11951068-11951106,11951586-11951982,
            11952016-11952314,11953743-11956795
          Length = 1273

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 182  DISVCSHFEKLK---FICLYQNNILNSVNVTIHKIIACVLDFTNL 57
            DIS C  F+KL    F  LY+  IL++ N T+H +   ++   NL
Sbjct: 883  DISACD-FDKLPTDLFCRLYKLEILDAQNCTLHAVPKDIIKLVNL 926


>12_01_0090 + 717524-719080
          Length = 518

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 258 LWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRI-LVTVVQIYFEAKNWSALNDHIV 434
           LWK   A  ++   ID       + R   +++ T    LVT+  +Y EAK W  + +H+ 
Sbjct: 443 LWKMLLAACRVHGHIDLAYMFFHELR---ELILTDNGGLVTISNVYAEAKRWDDV-EHLR 498

Query: 435 VLSKRRSQLKQA 470
           +  +  S LK A
Sbjct: 499 MKVRCNSALKHA 510


>10_01_0042 + 562246-563550
          Length = 434

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +3

Query: 411 SALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKL 542
           S+L +HI+V ++RR+ + +AV  ++ +C T V  T  +   + L
Sbjct: 234 SSLINHIIVGARRRATVFEAVAAVLWQCRTRVVMTDPEAPAVLL 277


>08_02_0696 + 20137167-20137485,20137601-20137740,20137841-20137951
          Length = 189

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 522 KETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEE 638
           K TKIKL++   T+  GK+Y  V    +T  L   R+E+
Sbjct: 81  KITKIKLLKPKETLLLGKVYRLVTSQEVTKALQARRQEK 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,339,170
Number of Sequences: 37544
Number of extensions: 286914
Number of successful extensions: 590
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)