Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I19
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17110| Best HMM Match : PCI (HMM E-Value=2.1e-26)                  219   2e-57
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  

>SB_17110| Best HMM Match : PCI (HMM E-Value=2.1e-26)
          Length = 451

 Score =  219 bits (534), Expect = 2e-57
 Identities = 99/152 (65%), Positives = 132/152 (86%)
 Frame = +3

Query: 192 DASGKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRIL 371
           D  G ++KMEVDYS T D+++P  ++ AA+GK+ E++D LL+LEKQTRT ADM ST+RIL
Sbjct: 6   DMKGNVVKMEVDYSETVDKRIPECEALAAEGKLTESLDILLSLEKQTRTAADMHSTARIL 65

Query: 372 VTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIET 551
           V +VQ+ F+A++W+ALN+HI++L+KRRSQLKQAV KM+QE YTY+D+TPD ETK+KLI+T
Sbjct: 66  VCIVQLCFKAQDWNALNEHIILLTKRRSQLKQAVTKMIQESYTYIDQTPDMETKLKLIDT 125

Query: 552 LRTITEGKIYVEVERARLTHILAKIREEEGNV 647
           LRT+T GKIYVE+ERARLT +LAKI+E EGN+
Sbjct: 126 LRTVTAGKIYVEIERARLTMMLAKIKENEGNI 157


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 411 SALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIE-TLRTITEGKIYVE 587
           S L   I  L   ++QLKQA  K+  +    V+   D   KIK +E  L    E + + E
Sbjct: 595 SKLLKEIADLKNDKNQLKQANQKLGHDRERAVEDAKDAFAKIKDLEKQLEDAIEKRKHAE 654

Query: 588 VERARLTHILAKIREE 635
            E   L   L K+++E
Sbjct: 655 QESDELEADLQKLKDE 670


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,260,977
Number of Sequences: 59808
Number of extensions: 356023
Number of successful extensions: 793
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)