Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I19
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome regu...   132   2e-31
U42844-6|AAB53814.1|  344|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 5 protein.
          Length = 490

 Score =  132 bits (320), Expect = 2e-31
 Identities = 69/149 (46%), Positives = 96/149 (64%)
 Frame = +3

Query: 201 GKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRILVTV 380
           G++ KME DYS   DE L L     AQ     A++ L  +EK TR GADM S +R++  +
Sbjct: 34  GRLFKMEQDYSKQVDEAL-LKARDIAQKDAVAAVESLNNIEKLTRLGADMKSNTRVVQYM 92

Query: 381 VQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRT 560
            ++ FE + W  L + I+ LSK+R  +K A+ KMV++    +DK P ++ K+KLIETLRT
Sbjct: 93  TKLCFEGQKWDLLMETIMTLSKKRLLIKMAIAKMVRDAVAMIDKMPTEDLKMKLIETLRT 152

Query: 561 ITEGKIYVEVERARLTHILAKIREEEGNV 647
           +T GKIYVEVERARLT ++ K  E EG +
Sbjct: 153 VTAGKIYVEVERARLTSMVVKKLEREGKL 181


>U42844-6|AAB53814.1|  344|Caenorhabditis elegans Hypothetical
           protein C08A9.6 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 77  RRQLFCVLLRLLSSEYCFGINI*ISVFQNDYKRRYRRSRC*WKNNK 214
           R  LF  +L L   EY     +   + Q++  +R RRS   W+N +
Sbjct: 299 RETLFKTILALEEPEYEHAAEVFTDLAQSETAKRRRRSEATWQNGQ 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,024,172
Number of Sequences: 27780
Number of extensions: 283524
Number of successful extensions: 741
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)