Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I19
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09900.2 68418.m01145 26S proteasome regulatory subunit, puta...   136   9e-33
At5g09900.1 68418.m01144 26S proteasome regulatory subunit, puta...   136   2e-32
At5g64760.1 68418.m08143 26S proteasome regulatory subunit, puta...   128   3e-30
At1g56420.1 68414.m06489 expressed protein ; expression supporte...    32   0.38 
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein...    31   0.66 
At4g21270.1 68417.m03074 kinesin-like protein A (KATA)                 31   0.66 
At3g09040.1 68416.m01063 pentatricopeptide (PPR) repeat-containi...    29   2.0  
At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containi...    28   4.7  

>At5g09900.2 68418.m01145 26S proteasome regulatory subunit,
           putative (RPN5) p55 protein-like
          Length = 442

 Score =  136 bits (330), Expect = 9e-33
 Identities = 64/125 (51%), Positives = 90/125 (72%)
 Frame = +3

Query: 273 AAQGKIQEAIDQLLALEKQTRTGADMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRR 452
           A  GK++  ID+LL  EKQ R   ++  T +    ++Q+ F+AK+W  LN+ I+ LSK+R
Sbjct: 2   ANSGKLEATIDRLLNEEKQMRLAENVAGTRKAATEILQLCFDAKDWKLLNEQILNLSKKR 61

Query: 453 SQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKIRE 632
            QLKQAV  MVQ+   Y+D+TPD ET+I+LI+TL  ++ GKIYVE+ERARLT  LAKI+E
Sbjct: 62  GQLKQAVQSMVQQAMQYIDQTPDIETRIELIKTLNNVSAGKIYVEIERARLTKKLAKIKE 121

Query: 633 EEGNV 647
           E+G +
Sbjct: 122 EQGQI 126


>At5g09900.1 68418.m01144 26S proteasome regulatory subunit,
           putative (RPN5) p55 protein-like
          Length = 442

 Score =  136 bits (328), Expect = 2e-32
 Identities = 63/122 (51%), Positives = 89/122 (72%)
 Frame = +3

Query: 282 GKIQEAIDQLLALEKQTRTGADMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQL 461
           GK++  ID+LL  EKQ R   ++  T +    ++Q+ F+AK+W  LN+ I+ LSK+R QL
Sbjct: 5   GKLEATIDRLLNEEKQMRLAENVAGTRKAATEILQLCFDAKDWKLLNEQILNLSKKRGQL 64

Query: 462 KQAVVKMVQECYTYVDKTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEEG 641
           KQAV  MVQ+   Y+D+TPD ET+I+LI+TL  ++ GKIYVE+ERARLT  LAKI+EE+G
Sbjct: 65  KQAVQSMVQQAMQYIDQTPDIETRIELIKTLNNVSAGKIYVEIERARLTKKLAKIKEEQG 124

Query: 642 NV 647
            +
Sbjct: 125 QI 126


>At5g64760.1 68418.m08143 26S proteasome regulatory subunit,
           putative (RPN5)
          Length = 442

 Score =  128 bits (309), Expect = 3e-30
 Identities = 60/119 (50%), Positives = 87/119 (73%)
 Frame = +3

Query: 285 KIQEAIDQLLALEKQTRTGADMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLK 464
           +++ +ID+LL  EKQ R   ++  T +    ++++ FEAK+W  LN+ I+ LSK+R QLK
Sbjct: 6   QLESSIDRLLNEEKQMRLAENVAGTRKAATEILKLCFEAKDWKLLNEQILNLSKKRGQLK 65

Query: 465 QAVVKMVQECYTYVDKTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEEG 641
           QAV  MVQ+   Y+D+T D ET+I+LI+TL  +  GKIYVE+ERARLT +LAKI+EE+G
Sbjct: 66  QAVQSMVQQAMQYIDQTLDIETRIELIKTLNNVAAGKIYVEIERARLTKMLAKIKEEQG 124


>At1g56420.1 68414.m06489 expressed protein ; expression supported
           by MPSS
          Length = 183

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +3

Query: 414 ALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRTITEGKIYVEVE 593
           AL   I+   K   +LK   +KM +E         +K+TK +L + LR   EG +  +  
Sbjct: 24  ALRLRIINQLKANEELKSTTIKMAEESKVLNTPGAEKQTKRELFDALRQELEGPVLEKAS 83

Query: 594 RARLTHILAK 623
           ++    I+ K
Sbjct: 84  KSVWDLIIEK 93


>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 1080

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
 Frame = +3

Query: 213 KMEVDYSATCDEKLPLW-----KSWAAQGKIQEAIDQLL-ALEKQTRTGADMVSTSRILV 374
           K+EVD S +       W     K    Q K   A ++   A EK+TR     +S  +++ 
Sbjct: 468 KVEVDLSLSAHGNARRWYEMKKKQETKQEKTVSAHEKAFRAAEKKTR---HQLSQEKVVA 524

Query: 375 TVVQI----YFEAKNWSALNDHIVVLSKRRSQLKQAVVK 479
           T+  +    +FE  NW   +++ +V+S R +Q  + +VK
Sbjct: 525 TISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVK 563


>At4g21270.1 68417.m03074 kinesin-like protein A (KATA)
          Length = 793

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 31/160 (19%), Positives = 68/160 (42%), Gaps = 1/160 (0%)
 Frame = +3

Query: 162 MTTNGDIGGLDASGKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLLALEKQTRTG 341
           +T N D+G ++  GK+   + +  A   E+    K +  + KI++  D +  L+   +  
Sbjct: 51  VTMNSDVGSIEECGKVDFTKDEILALLSERAKAGK-FDTKAKIEQMTDIIKRLKVCVKWF 109

Query: 342 ADMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPD 521
                T       +++  E+      N   +    +  +L+  + K+ +   +  +K   
Sbjct: 110 QQADETHVQEKENLKVSLESSE-QKYNHKELEARTKEEELQATISKLEENVVSLHEKLAK 168

Query: 522 KETKIK-LIETLRTITEGKIYVEVERARLTHILAKIREEE 638
           +E+  +  IE  R   E ++  E  +A L   L K++EE+
Sbjct: 169 EESSTQDAIECHRREKEARVAAEKVQASLGEELDKVKEEK 208


>At3g09040.1 68416.m01063 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 1028

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +3

Query: 279 QGKIQEAIDQLLALEKQTRTGA---DMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKR 449
           QGK    +     L++   TG+   DM S   I+    +++     WS ++ + ++    
Sbjct: 547 QGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYS 606

Query: 450 RSQLKQAVVKMVQECYT 500
           ++ L++AVV + QE  T
Sbjct: 607 QNNLEEAVV-LFQEMLT 622


>At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 879

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 477 KMVQECYTYVDKTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAK 623
           K V E +T +    DK  ++K +  L  +  G+I +EVE  RL  ++ K
Sbjct: 756 KGVYEAWTRMRNIEDKIPEMKSLGELIGLFSGRIDMEVELKRLDEVIEK 804


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,009,999
Number of Sequences: 28952
Number of extensions: 252781
Number of successful extensions: 549
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)