Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I17
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    28   0.87 
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   4.6  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.1  

>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 25/112 (22%), Positives = 42/112 (37%)
 Frame = +1

Query: 127 DNVHLNEDEREKANWYTAECGVETGVSTEVINAAKIGKYSKDKAFKKFVLCFFKKSAILN 306
           D  HL +  RE     TA C  +T     +    +  + S     K+F  C +   +  N
Sbjct: 53  DAEHLGKRHREFLPRVTAYCTCDTFRVDLLFKFFQSRRSSHKTRPKQFDECIYSPYSYNN 112

Query: 307 SDGTLNMVVALAKLPSGVNKSEAQSVLEQCKNKTGQDAADKAFAILQCFHKG 462
            + T  +   L      +N+  +Q  L+    ++G D     F  + CF  G
Sbjct: 113 EETTDLLPDTLESSRGTLNRESSQESLQSIFEESGLDRNQPLFREVFCFTYG 164


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 10  TV*SQLS*YVWRSPSSTAEPIMKSVVLICLAFAVFNCGADNVHLNE 147
           TV   +  +V    SST  PI  +  + CL    F C      LNE
Sbjct: 201 TVFEDIMSWVVAMSSSTMRPIRHTATVFCLNIMTFLCEKSKELLNE 246


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 250 DKAFKKFVLCFFKKSAILNS 309
           DKA K++V CF K   I+ S
Sbjct: 352 DKATKQYVSCFLKVDGIMRS 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,527
Number of Sequences: 5004
Number of extensions: 41161
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)