Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I17
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)                   31   0.52 
SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)                 29   2.1  
SB_18065| Best HMM Match : Usp (HMM E-Value=3.7e-20)                   29   2.1  
SB_21101| Best HMM Match : F-box (HMM E-Value=0.0024)                  29   3.7  
SB_4486| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.8  
SB_20792| Best HMM Match : SHMT (HMM E-Value=0)                        28   6.4  
SB_57994| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_14825| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)
          Length = 292

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
 Frame = -1

Query: 341 ASATTMFNVPSEFKIADFLKKQSTNFLKALSLEYF-------PIFAAFITSVLTPVSTP 186
           A+ATT   +   F I + L+K++T F+  L++  F       P+FA ++  V+ P+S+P
Sbjct: 28  AAATTNALIILAFIINEHLRKRNTYFILNLAISDFLFGSVLAPMFAEYLRKVILPLSSP 86


>SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)
          Length = 1477

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 241  YSKDKAFK-KFVLCFFKKSAILNSDGTLNMVVALAKLPSGVNKSEAQSV 384
            Y+ D  F    ++    +S +++ DG+ N+ VA+A LP G   +  + V
Sbjct: 1240 YTNDACFNGSLIIPLAIRSGLMDMDGSENLTVAVADLPQGYQLNSFREV 1288


>SB_18065| Best HMM Match : Usp (HMM E-Value=3.7e-20)
          Length = 155

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 447 MLSQRDQDTYFILINLQISNYIGHSKLLPTVL 542
           ++  RD  T+   +N  +SNY+ H   LPTV+
Sbjct: 112 VMGSRDLGTFARALNSSVSNYVVHHADLPTVI 143


>SB_21101| Best HMM Match : F-box (HMM E-Value=0.0024)
          Length = 287

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 253 KAFKKFVLCFFKKSAILNSDGTLNMVVALAKLPSGVNKSEAQSVLEQCKNKTGQDA 420
           + F +    +FK S+ L+  G   +     ++ +  N S  + VL+ CKN   +DA
Sbjct: 53  RTFHEMCSVYFKTSSSLDFSGETRLTSEALRIITRENISLQKLVLKNCKNPLKEDA 108


>SB_4486| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 109 VFNCGADNVHLNEDEREKANWYTAECGVET 198
           VF CG + + +NED  E   WY    G E+
Sbjct: 136 VFRCGIEGI-VNEDLNEAFKWYKKAAGEES 164


>SB_20792| Best HMM Match : SHMT (HMM E-Value=0)
          Length = 252

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 280 FFKKSAILNSDGTLNMVVALAKLPSGVNKSEAQSVLEQ 393
           F ++   L +DGT N +V +   P G+  ++A+ +LE+
Sbjct: 113 FMERGYKLVTDGTDNHLVLMDLRPKGIGGAQAERILEE 150


>SB_57994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 241 YSKDKAFKKFVLCFFKKSAI 300
           Y+K K FK F +C F KSAI
Sbjct: 21  YTKVKGFKTFYVCTFIKSAI 40


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 182  SAVYQLAFSLSSSLRWTLSAPQLKTANARHIRTTDFIIGSAVEDGERQTY 33
            SA     F++ S  R+T++A        RH+R TD  I  A++    Q Y
Sbjct: 3481 SATIAFPFNIVSGTRYTVTAISQLVDGVRHMRGTDRRIDLALQLAYSQLY 3530


>SB_14825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 199 GVSTEVINAAKIGKYSKDK-AFKKFVLCFFKKSAILNSDGTLNMVVALAKLPSG 357
           G + +VI+  K  K       F K++    +K A+LN  G L +   L +LPSG
Sbjct: 27  GAAQDVIDYIKSDKPDLTVYTFCKYLKTIKRKDAVLNLKGELTVDKHLVELPSG 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,332,662
Number of Sequences: 59808
Number of extensions: 291896
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)