Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I17
         (581 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79360.1 68414.m09248 transporter-related low similarity to S...    33   0.18 
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,...    30   0.98 
At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family pr...    29   3.0  
At5g61730.1 68418.m07746 ABC transporter family protein contains...    28   4.0  
At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel...    28   4.0  
At2g07170.1 68415.m00821 expressed protein                             27   6.9  
At2g05790.1 68415.m00623 glycosyl hydrolase family 17 protein si...    27   9.1  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    27   9.1  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    27   9.1  

>At1g79360.1 68414.m09248 transporter-related low similarity to
           SP|O76082 Organic cation/carnitine transporter 2 (Solute
           carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) {Homo
           sapiens}; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 527

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 471 CLGPFVKAL*DRKGFIGCVLAGLILA 394
           C G FVK L +   F+GC++ GL+L+
Sbjct: 107 CAGSFVKGLPESSFFVGCLIGGLVLS 132


>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
           PF04950: Protein of unknown function (DUF663)
          Length = 1147

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 202 VSTEVINAAKIGKYSKDKAFKKFVLCFFKKSAILNSDGTLNMVVALAKLPSGVNKSEAQS 381
           V  +++ + +  KYS D+   K  + FF K    +S+  L    A   LP G + SE+QS
Sbjct: 383 VGEDLVKSLQNTKYSVDEKLDKTFINFFGKKTSASSETKLKAEDAYHSLPEG-SDSESQS 441


>At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family
           protein (bHLH125) contains Pfam profile: PF00010
           helix-loop-helix DNA-binding domain;  supporting cDNA
           gi|20805889|gb|AF506369.1|
          Length = 259

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -1

Query: 278 QSTNFLKALSLEYFPIFAAF--ITSVLTPVSTPHSAVYQLAFSLSSSLRWTLSA 123
           Q+ N++K L ++   +      +  V++  +T HSA+ +   SLSSS   TLS+
Sbjct: 117 QAVNYIKDLQIKIKELNEKRNRVKKVISATTTTHSAIEECTSSLSSSAASTLSS 170


>At5g61730.1 68418.m07746 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter
          Length = 940

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = -1

Query: 305 FKIADFLKKQSTNFLKALSLEYFPIFAAFITSVLTPVSTPHSAVYQLAFSLSSSLRWTLS 126
           F ++  + K S+    A ++ +      FIT ++T    P+S+    A+S+ S + W+L 
Sbjct: 327 FALSSIISKSSS----ATTVGFLVFLVGFITQIVTTAGFPYSS----AYSIGSRVIWSLF 378

Query: 125 APQLKTA 105
            P   +A
Sbjct: 379 PPNTFSA 385


>At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel,
           putative (CNGC8) similar to cyclic nucleotide and
           calmodulin-regulated ion channel GI:4581207 from
           (Arabidopsis thaliana)
          Length = 728

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = -1

Query: 275 STNFLKALS-LEYFPIFAAFITSVLTPVSTPHSAVYQLAFSLSSSLRWTLSAPQLKTANA 99
           ST  +KAL+ +E F + A  +  V +     HS   Q  F   S    T +A  ++ A  
Sbjct: 572 STRTVKALTEVEAFALEAEELKFVASQFRRLHSRQVQQTFRFYSQQWRTWAACFIQAAWR 631

Query: 98  RHIRTTDFIIGSAVEDGERQTYQDN 24
           RH+R     +    E+ E   Y+D+
Sbjct: 632 RHLRRKIAELRRKEEEEEEMDYEDD 656


>At2g07170.1 68415.m00821 expressed protein
          Length = 893

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 377 WASDLLTPEGSFASATTMFNVPSEFKIADFLKKQSTNFLKALSLEYFPI 231
           W  ++  PE SF S   ++N  SE         ++TN    ++ EY P+
Sbjct: 379 WHIEIAVPESSFVSKVDLYNEESEGSCITKTFAETTN-TPEVTYEYIPM 426


>At2g05790.1 68415.m00623 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 472

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/61 (22%), Positives = 26/61 (42%)
 Frame = -1

Query: 317 VPSEFKIADFLKKQSTNFLKALSLEYFPIFAAFITSVLTPVSTPHSAVYQLAFSLSSSLR 138
           +PS FK+   LK Q    +K    +   + A   + +   V  P+  ++  A   S ++ 
Sbjct: 36  LPSAFKVVQLLKSQGITRVKIFDADPSVLKALSGSGIKVTVDLPNELLFSAAKRTSFAVS 95

Query: 137 W 135
           W
Sbjct: 96  W 96


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
            identical to ubiquitin-protein ligase 2 [Arabidopsis
            thaliana] GI:7108523; E3, HECT-domain protein family;
            similar to ubiquitin-protein ligase 2 GI:7108523 from
            [Arabidopsis thaliana]
          Length = 3658

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 236  PIFAAFITSVLTPVSTPHSAVYQLAFSLSSSLRWTLSA 123
            P+    +  VLT ++T HSAV  + F   SSL   LS+
Sbjct: 2860 PLVFRRVLEVLTYLATNHSAVADMLFYFDSSLLSQLSS 2897


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
            identical to ubiquitin-protein ligase 1 [Arabidopsis
            thaliana] GI:7108521; E3, HECT-domain protein family;
            similar to GI:7108521, GB:AAF36454 from [Arabidopsis
            thaliana]
          Length = 3891

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 236  PIFAAFITSVLTPVSTPHSAVYQLAFSLSSSLRWTLSA 123
            P+    +  VLT ++T HSAV  + F   SSL   LS+
Sbjct: 3087 PLVFRRVLEVLTYLATNHSAVADMLFYFDSSLLSQLSS 3124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,483,463
Number of Sequences: 28952
Number of extensions: 209825
Number of successful extensions: 626
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)