Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I16
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.84 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.84 
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   2.6  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   7.8  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 468 PYEAQAFFRELVSPQDFPKDY--VGYIKKIMKLMQHK 572
           P EA+ FFREL +P   P++Y    Y  +++ ++  K
Sbjct: 304 PEEAETFFRELEAP--CPRNYNPADYFIQLLAIVPEK 338


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 468 PYEAQAFFRELVSPQDFPKDY--VGYIKKIMKLMQHK 572
           P EA+ FFREL +P   P++Y    Y  +++ ++  K
Sbjct: 304 PEEAETFFRELEAP--CPRNYNPADYFIQLLAIVPEK 338


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 359 TIGILCLFGIGSYWN 403
           TIG LC++ I + WN
Sbjct: 51  TIGCLCIWSIFNKWN 65


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 335 WRFRALSCTIGILCLFG 385
           W F  L   I  LCLFG
Sbjct: 322 WSFALLITRIVCLCLFG 338


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,640
Number of Sequences: 336
Number of extensions: 3382
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)