Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I16
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    27   2.8  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    26   4.8  
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    26   6.4  

>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = -1

Query: 311 DNNTSVITTSY---MYFVTCFWFYSFPFNY-QCC 222
           D  T+ ITT Y   M    CF +Y   FNY +CC
Sbjct: 135 DYRTTAITTIYANAMECPICFLYYPSNFNYTRCC 168


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 12  DSNGQITSPLNERKIKIKTYN*KS 83
           D+ G I + ++ERK KI  YN KS
Sbjct: 161 DATGLIFASVSERKYKISLYNIKS 184


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +3

Query: 162 TMAEVEEK--VIMTPKCKTANSTTLVVERKAVEPEASDKIHIAGGDHTGIIINKQETYEN 335
           T   V EK   +     K   S+T   E + + P         G +H  +I  ++E  E 
Sbjct: 14  TRDAVHEKNCTLRVKSTKKRRSSTKDEETRGMHPHIKSSFR-NGMNHARVI--REEDMEV 70

Query: 336 GVSEPCHAQLEFYVYLVSGATG 401
            V EPC   L   VY+V+G  G
Sbjct: 71  -VFEPCFINLSKPVYVVNGIGG 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,242
Number of Sequences: 5004
Number of extensions: 53980
Number of successful extensions: 204
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)