Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I16
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1012 + 23295976-23296264,23296475-23296548,23296972-232969...    31   0.95 
05_06_0041 - 25120961-25121005,25121143-25121194,25121429-251214...    29   3.8  
02_05_0243 - 27124559-27124864,27126922-27126990,27127741-271279...    28   6.7  
09_03_0031 + 11735431-11735728,11736704-11737041,11737150-117372...    28   8.8  
06_01_0487 - 3459853-3459917,3460058-3460408,3460991-3461114,346...    28   8.8  
01_05_0523 - 22915390-22915901,22916496-22916619,22916708-229168...    28   8.8  
01_03_0012 + 11638363-11638476,11638854-11640678,11641855-116420...    28   8.8  

>07_03_1012 +
           23295976-23296264,23296475-23296548,23296972-23296996,
           23297486-23297568,23297653-23297685,23298322-23298469,
           23298625-23298722
          Length = 249

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 426 LRFWFKPQMTPNERPYEAQAFFRELVSPQDFP-KDYVGYIKKIMKL 560
           L  W    + P   PYE   FF ++V P D+P K  +G I K+M +
Sbjct: 85  LYHWLSTIIGPQGSPYEGGIFFLDIVFPIDYPFKPPMG-ITKVMNI 129


>05_06_0041 -
           25120961-25121005,25121143-25121194,25121429-25121496,
           25122167-25122220,25122473-25122541,25122655-25122714,
           25122876-25123048,25123847-25123920,25124472-25124585,
           25124688-25124754,25124840-25124904,25125504-25125583,
           25125689-25125733,25126235-25126300,25126746-25126901,
           25127292-25127516,25127630-25127672,25127997-25128040,
           25128191-25128263,25130335-25130414
          Length = 550

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 410 CVGSSSSRY-QINIEFQLCMTRLGNAIFISFLLVDNNTSVITTSYMYFVTCFW 255
           C G     Y + + EFQ+CM  +GN  F +FL     +     S+   VTCF+
Sbjct: 363 CAGDFVEVYNEESQEFQICM--IGNYGFFAFLTFSQYSYFAPASWDAVVTCFF 413


>02_05_0243 -
           27124559-27124864,27126922-27126990,27127741-27127926,
           27128572-27129093
          Length = 360

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 25/99 (25%), Positives = 41/99 (41%)
 Frame = +3

Query: 156 AVTMAEVEEKVIMTPKCKTANSTTLVVERKAVEPEASDKIHIAGGDHTGIIINKQETYEN 335
           A T ++V      +P      S   V+   A  P+       AGG   G+   ++ ++  
Sbjct: 5   AKTDSDVTSLAPSSPPRSPRRSAYYVLSPAASHPDVVVASGGAGGGGGGVAAAEKMSFAG 64

Query: 336 GVSEPCHAQLEFYVYLVSGATGTHTREARALRFWFKPQM 452
             S P  + L ++ Y  SGA   H+RE+   R  F  Q+
Sbjct: 65  --STPAESPLHYH-YHHSGAAVHHSRESSTGRLLFSDQL 100


>09_03_0031 +
           11735431-11735728,11736704-11737041,11737150-11737285,
           11737477-11737613,11737701-11737824,11738859-11739364
          Length = 512

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 615 GYASPPPEINGILTSKSVIYNF 680
           GYA+P   + G LTSKS +Y+F
Sbjct: 335 GYAAPEYVMTGHLTSKSDVYSF 356


>06_01_0487 -
           3459853-3459917,3460058-3460408,3460991-3461114,
           3461226-3461359,3462277-3462412,3462486-3462834,
           3463994-3464000,3464058-3464226
          Length = 444

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 615 GYASPPPEINGILTSKSVIYNF 680
           GYA+P   + G LTSKS +Y+F
Sbjct: 297 GYAAPEYVMTGHLTSKSDVYSF 318


>01_05_0523 -
           22915390-22915901,22916496-22916619,22916708-22916844,
           22917383-22917518,22917614-22917951,22919426-22919663
          Length = 494

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 615 GYASPPPEINGILTSKSVIYNF 680
           GYA+P   + G LTSKS +Y+F
Sbjct: 315 GYAAPEYVMTGHLTSKSDVYSF 336


>01_03_0012 +
           11638363-11638476,11638854-11640678,11641855-11642096,
           11642198-11642327,11642464-11642774
          Length = 873

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 615 GYASPPPEINGILTSKSVIYNF 680
           GY  P   +NGILT KS +Y+F
Sbjct: 232 GYVDPAFCMNGILTPKSDVYSF 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,547,856
Number of Sequences: 37544
Number of extensions: 327449
Number of successful extensions: 977
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)