Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I16
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)                      31   1.3  
SB_55549| Best HMM Match : zf-C2H2 (HMM E-Value=0.79)                  29   5.2  
SB_44105| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.42)            28   6.8  
SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)                28   6.8  
SB_49274| Best HMM Match : p450 (HMM E-Value=0)                        28   9.0  
SB_2389| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
          Length = 1049

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 540 IKKIMKLMQHKYQQLKMLEVELRQEGYASPPPEINGILTSKSVIYNF 680
           + +I K  +  Y +L+M+E+    E + +PPP+ NGI+      ++F
Sbjct: 150 VNQIQKNAKDIYSRLEMIEIT---ELFKTPPPKTNGIMPDAKEYFDF 193


>SB_55549| Best HMM Match : zf-C2H2 (HMM E-Value=0.79)
          Length = 578

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 510 QDFPKDYVGYIKKIMKLMQHKYQQLKMLEVEL-RQEGYASPPPEINGILTSKSVIYNFTN 686
           QD+  ++  Y  +++    H++  L   E EL  QE Y  P  +  G+L++KS   N  N
Sbjct: 185 QDYQTEHTTYFAELIMFDNHRHCLLTDGEYELVLQEKYKRPGRK-RGLLSNKSSWENVFN 243

Query: 687 GS 692
           G+
Sbjct: 244 GN 245


>SB_44105| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.42)
          Length = 326

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 350 RLGNAIFISFLLVDNNTSVITTSY-MYFVTCFWFYSFPFNYQCCGIGRFTFRCHY 189
           +LGN +FISF+ V N  +V   S   Y + C +     +    C  G  T   HY
Sbjct: 203 QLGNLLFISFIAVLNTIAVAVESRDTYDMVCLYAGLALYVILQCMAGILTLHKHY 257


>SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)
          Length = 561

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 240 RKAVEPEASDKIHIAGGDHTGIIINKQETYENGVSEPCHAQLEFYVYLVSGATGTHTREA 419
           + ++E   +D+ +I  GD    + +  E YEN   + CH   E   Y +S     H+ ++
Sbjct: 378 KSSIETTDNDQSNIENGDDDSGVESPNEAYEN---DSCHND-ENQTYYISSNHKYHSSKS 433

Query: 420 RALRFWF 440
           R  R  F
Sbjct: 434 RRKRTAF 440


>SB_49274| Best HMM Match : p450 (HMM E-Value=0)
          Length = 568

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 303 IIINKQETYENGVSEPCHAQLEFYVYLVSGATGTHTREAR 422
           I + +++TYEN   E CHA      +L S  T +H  E +
Sbjct: 310 IYLERRQTYENEEQESCHAS-AITKHLSSFMTTSHMEEGQ 348


>SB_2389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -3

Query: 459 LESSEV*TRTLEHVLHVCGFQ*-----LPIPNKHRIPIVHDKARKRHFHKF 322
           L+++   T +  +V+HV GF+      +    KHR P   DK  K H HKF
Sbjct: 284 LKAARPSTPSGNYVMHVRGFKRTVYCDMDTAGKHREPEHRDKETKPHRHKF 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,384,358
Number of Sequences: 59808
Number of extensions: 387885
Number of successful extensions: 919
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)