Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I16
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125448-3|AAD12809.1|  575|Caenorhabditis elegans Hypothetical ...    65   4e-11
AF125448-2|AAL32228.1|  582|Caenorhabditis elegans Hypothetical ...    65   4e-11
AF125448-1|AAD12814.1|  578|Caenorhabditis elegans Hypothetical ...    65   4e-11
AF036702-14|AAB88378.2|  396|Caenorhabditis elegans Hypothetical...    29   2.6  
AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical...    29   2.6  
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF022969-2|AAB69893.2|  354|Caenorhabditis elegans Hypothetical ...    29   4.5  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    28   6.0  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    28   6.0  
AL033510-1|CAA22064.2|  339|Caenorhabditis elegans Hypothetical ...    28   6.0  
AL031627-23|CAA20946.2|  174|Caenorhabditis elegans Hypothetical...    28   6.0  
AL031627-4|CAA20957.1|  230|Caenorhabditis elegans Hypothetical ...    28   6.0  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    28   6.0  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    28   6.0  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    28   6.0  
AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AF125448-3|AAD12809.1|  575|Caenorhabditis elegans Hypothetical
           protein H14E04.2a protein.
          Length = 575

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
 Frame = +3

Query: 186 VIMTPKCKTANSTTLVVERKAVEPEASDKI-HIAGGDHTGIIINKQETYENGVSEPCHAQ 362
           V++TPK + ++   + + R+  E   SDK+ HI GG + G+IIN+ E   N         
Sbjct: 9   VVLTPKKQDSDHNIVKIHRE--ETAKSDKVLHIGGGSYAGLIINRYEEKSN-FESTADVS 65

Query: 363 LEFYVYLVSGATGTHTREARALRFWFKPQMTPNERPYEAQAFFRELVSPQDFPKDYVGYI 542
           L F V+L +       +E R+L F  +  +  +        FF+ L+S  + P DYV ++
Sbjct: 66  LSFSVHLSNKNHQKQVQEKRSLFFKLRKSVELDVGRLVVHKFFKNLLS--NLPGDYVSFM 123

Query: 543 KKIMKLMQHKYQQLKMLEVELR 608
           K+ M L+Q  Y ++  L ++ +
Sbjct: 124 KRAMTLLQKDYTEIVELVIDYK 145


>AF125448-2|AAL32228.1|  582|Caenorhabditis elegans Hypothetical
           protein H14E04.2c protein.
          Length = 582

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
 Frame = +3

Query: 186 VIMTPKCKTANSTTLVVERKAVEPEASDKI-HIAGGDHTGIIINKQETYENGVSEPCHAQ 362
           V++TPK + ++   + + R+  E   SDK+ HI GG + G+IIN+ E   N         
Sbjct: 9   VVLTPKKQDSDHNIVKIHRE--ETAKSDKVLHIGGGSYAGLIINRYEEKSN-FESTADVS 65

Query: 363 LEFYVYLVSGATGTHTREARALRFWFKPQMTPNERPYEAQAFFRELVSPQDFPKDYVGYI 542
           L F V+L +       +E R+L F  +  +  +        FF+ L+S  + P DYV ++
Sbjct: 66  LSFSVHLSNKNHQKQVQEKRSLFFKLRKSVELDVGRLVVHKFFKNLLS--NLPGDYVSFM 123

Query: 543 KKIMKLMQHKYQQLKMLEVELR 608
           K+ M L+Q  Y ++  L ++ +
Sbjct: 124 KRAMTLLQKDYTEIVELVIDYK 145


>AF125448-1|AAD12814.1|  578|Caenorhabditis elegans Hypothetical
           protein H14E04.2b protein.
          Length = 578

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
 Frame = +3

Query: 186 VIMTPKCKTANSTTLVVERKAVEPEASDKI-HIAGGDHTGIIINKQETYENGV--SEPCH 356
           V++TPK + ++   + + R+  E   SDK+ HI GG + G+IIN+ E   N V       
Sbjct: 9   VVLTPKKQDSDHNIVKIHRE--ETAKSDKVLHIGGGSYAGLIINRYEEKSNFVFSESTAD 66

Query: 357 AQLEFYVYLVSGATGTHTREARALRFWFKPQMTPNERPYEAQAFFRELVSPQDFPKDYVG 536
             L F V+L +       +E R+L F  +  +  +        FF+ L+S  + P DYV 
Sbjct: 67  VSLSFSVHLSNKNHQKQVQEKRSLFFKLRKSVELDVGRLVVHKFFKNLLS--NLPGDYVS 124

Query: 537 YIKKIMKLMQHKYQQLKMLEVELR 608
           ++K+ M L+Q  Y ++  L ++ +
Sbjct: 125 FMKRAMTLLQKDYTEIVELVIDYK 148


>AF036702-14|AAB88378.2|  396|Caenorhabditis elegans Hypothetical
           protein F33D4.6a protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 369 FYVYLVSGATGTHTREARALRFWFKPQMTPNERP 470
           F +  +  ATG   REA+A +   KPQ TP + P
Sbjct: 160 FSISRLISATGNAIREAQAAQAAQKPQQTPQQEP 193


>AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical
           protein F33D4.6b protein.
          Length = 648

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 369 FYVYLVSGATGTHTREARALRFWFKPQMTPNERP 470
           F +  +  ATG   REA+A +   KPQ TP + P
Sbjct: 160 FSISRLISATGNAIREAQAAQAAQKPQQTPQQEP 193


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 425 STCFTCVGSSSSRYQINIEFQLCMTRLGNAIFISFLLVDNNTSVITTSYMYFVT-CFWFY 249
           S  F  +G  + +Y  +  F       GNA F  F++   + +  T+ + YFV    W +
Sbjct: 303 SNLFASLGKDN-QYTSSFLFFCYFLHFGNAYFQYFMVTLMSLNRTTSIFFYFVNEKIWKF 361

Query: 248 SFPFN 234
            FPF+
Sbjct: 362 LFPFS 366


>AF022969-2|AAB69893.2|  354|Caenorhabditis elegans Hypothetical
           protein C29G2.4 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 335 IFISFLLVDNNT-SVITTSYMYFVTCFWFYSFPFNY 231
           I++++  V NNT S + T+ MYF  C++   F F Y
Sbjct: 196 IYLNYTTVVNNTLSTVLTTGMYFHLCYYLI-FKFGY 230


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/64 (17%), Positives = 30/64 (46%)
 Frame = -1

Query: 386  YQINIEFQLCMTRLGNAIFISFLLVDNNTSVITTSYMYFVTCFWFYSFPFNYQCCGIGRF 207
            + +++ F+LC+  + N +F +   V  +   +   ++YF +  +    P + +   + +F
Sbjct: 910  FVLSMTFELCVKIIANGLFFTPKAVVRDVGGVMNLFIYFTSVIFLAWMPKHVEINSLAQF 969

Query: 206  TFRC 195
               C
Sbjct: 970  LMIC 973


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/64 (17%), Positives = 30/64 (46%)
 Frame = -1

Query: 386  YQINIEFQLCMTRLGNAIFISFLLVDNNTSVITTSYMYFVTCFWFYSFPFNYQCCGIGRF 207
            + +++ F+LC+  + N +F +   V  +   +   ++YF +  +    P + +   + +F
Sbjct: 944  FVLSMTFELCVKIIANGLFFTPKAVVRDVGGVMNLFIYFTSVIFLAWMPKHVEINSLAQF 1003

Query: 206  TFRC 195
               C
Sbjct: 1004 LMIC 1007


>AL033510-1|CAA22064.2|  339|Caenorhabditis elegans Hypothetical
           protein Y40H7A.1 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 709 ILSSMYEPLVKLYITLLLVNI-PLISGGGDAYPSCLNSTSSIF 584
           +LS M  PL+ +YI +L+V I P+ +   DA  S  +   SI+
Sbjct: 258 LLSQMIVPLILIYIPILIVMILPIFNVKNDASTSLTSILISIY 300


>AL031627-23|CAA20946.2|  174|Caenorhabditis elegans Hypothetical
           protein Y102A5C.9 protein.
          Length = 174

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +1

Query: 349 LVMHNWNSMFIWYRELLE---PTHVKHV 423
           +V HN N++  W+ EL++    TH KHV
Sbjct: 107 IVYHNHNTIVKWFEELVQSKNQTHCKHV 134


>AL031627-4|CAA20957.1|  230|Caenorhabditis elegans Hypothetical
           protein Y102A5C.13 protein.
          Length = 230

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +1

Query: 349 LVMHNWNSMFIWYRELLE---PTHVKHV 423
           +V HN N++  W+ EL++    TH KHV
Sbjct: 45  IVYHNHNTIVKWFEELVQSKNQTHCKHV 72


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            a protein.
          Length = 1562

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/64 (17%), Positives = 30/64 (46%)
 Frame = -1

Query: 386  YQINIEFQLCMTRLGNAIFISFLLVDNNTSVITTSYMYFVTCFWFYSFPFNYQCCGIGRF 207
            + +++ F+LC+  + N +F +   V  +   +   ++YF +  +    P + +   + +F
Sbjct: 1002 FVLSMTFELCVKIIANGLFFTPKAVVRDVGGVMNLFIYFTSVIFLAWMPKHVEINSLAQF 1061

Query: 206  TFRC 195
               C
Sbjct: 1062 LMIC 1065


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            c protein.
          Length = 1913

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/64 (17%), Positives = 30/64 (46%)
 Frame = -1

Query: 386  YQINIEFQLCMTRLGNAIFISFLLVDNNTSVITTSYMYFVTCFWFYSFPFNYQCCGIGRF 207
            + +++ F+LC+  + N +F +   V  +   +   ++YF +  +    P + +   + +F
Sbjct: 1055 FVLSMTFELCVKIIANGLFFTPKAVVRDVGGVMNLFIYFTSVIFLAWMPKHVEINSLAQF 1114

Query: 206  TFRC 195
               C
Sbjct: 1115 LMIC 1118


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            d protein.
          Length = 1861

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/64 (17%), Positives = 30/64 (46%)
 Frame = -1

Query: 386  YQINIEFQLCMTRLGNAIFISFLLVDNNTSVITTSYMYFVTCFWFYSFPFNYQCCGIGRF 207
            + +++ F+LC+  + N +F +   V  +   +   ++YF +  +    P + +   + +F
Sbjct: 974  FVLSMTFELCVKIIANGLFFTPKAVVRDVGGVMNLFIYFTSVIFLAWMPKHVEINSLAQF 1033

Query: 206  TFRC 195
               C
Sbjct: 1034 LMIC 1037


>AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical
           protein C29G2.5 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 320 LLVDNNTSVITTSYMYFVTCFWFYSFPFNY 231
           ++V+N T+ I T+ MYF  C++   F F Y
Sbjct: 325 VVVNNTTATILTTGMYFHLCYYLI-FKFGY 353


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,328,791
Number of Sequences: 27780
Number of extensions: 304269
Number of successful extensions: 952
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)