Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I16
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10) id...    30   1.4  
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    29   3.2  
At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative ...    28   5.6  
At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative ...    28   5.6  
At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative ...    28   5.6  
At5g15080.1 68418.m01767 protein kinase, putative similar to pro...    28   7.4  
At5g07960.1 68418.m00924 expressed protein contains Pfam PF03669...    28   7.4  
At3g01300.1 68416.m00039 protein kinase, putative similar to pro...    28   7.4  
At1g69790.1 68414.m08030 protein kinase, putative similar to pro...    27   9.8  

>At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10)
           identical to ubiquitin-conjugating enzyme COP10
           [Arabidopsis thaliana] GI:20065779; contains Pfam
           profile PF00179: Ubiquitin-conjugating enzyme
          Length = 182

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 426 LRFWFKPQMTPNERPYEAQAFFRELVSPQDFP 521
           L  W    + P+  PYE   FF +++ P D+P
Sbjct: 65  LYHWIATIIGPSGTPYEGGIFFLDIIFPSDYP 96


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
           similarity to flagelliform silk protein [Nephila
           clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 302 TSVITTSYMYFVTCFWFYSFPFN-YQCCGI-GRFTFRCHYHLFFNF 171
           T ++  S   F+    F    F+ + CCG+ GRF FRC +  +F F
Sbjct: 3   TCILKISISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQF 48


>At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative
           nearly identical to ubiquitin-conjugating enzyme E2
           [Catharanthus roseus] GI:5381319; contains Pfam profile
           PF00179: Ubiquitin-conjugating enzyme
          Length = 153

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/87 (20%), Positives = 42/87 (48%)
 Frame = +3

Query: 426 LRFWFKPQMTPNERPYEAQAFFRELVSPQDFPKDYVGYIKKIMKLMQHKYQQLKMLEVEL 605
           +R++    + P + PYE   F  EL  P+++P      ++ + K+      +L  + +++
Sbjct: 34  MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM-AAPKVRFLTKIYHPNIDKLGRICLDI 92

Query: 606 RQEGYASPPPEINGILTSKSVIYNFTN 686
            ++ + SP  +I  +L S   + +  N
Sbjct: 93  LKDKW-SPALQIRTVLLSIQALLSAPN 118


>At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative
           nearly identical to ubiquitin-conjugating enzyme E2
           [Catharanthus roseus] GI:5381319; contains Pfam profile
           PF00179: Ubiquitin-conjugating enzyme
          Length = 153

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/87 (20%), Positives = 42/87 (48%)
 Frame = +3

Query: 426 LRFWFKPQMTPNERPYEAQAFFRELVSPQDFPKDYVGYIKKIMKLMQHKYQQLKMLEVEL 605
           +R++    + P + PYE   F  EL  P+++P      ++ + K+      +L  + +++
Sbjct: 34  MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM-AAPKVRFLTKIYHPNIDKLGRICLDI 92

Query: 606 RQEGYASPPPEINGILTSKSVIYNFTN 686
            ++ + SP  +I  +L S   + +  N
Sbjct: 93  LKDKW-SPALQIRTVLLSIQALLSAPN 118


>At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative
           nearly identical to ubiquitin-conjugating enzyme E2
           [Catharanthus roseus] GI:5381319; contains Pfam profile
           PF00179: Ubiquitin-conjugating enzyme
          Length = 120

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/87 (20%), Positives = 42/87 (48%)
 Frame = +3

Query: 426 LRFWFKPQMTPNERPYEAQAFFRELVSPQDFPKDYVGYIKKIMKLMQHKYQQLKMLEVEL 605
           +R++    + P + PYE   F  EL  P+++P      ++ + K+      +L  + +++
Sbjct: 1   MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM-AAPKVRFLTKIYHPNIDKLGRICLDI 59

Query: 606 RQEGYASPPPEINGILTSKSVIYNFTN 686
            ++ + SP  +I  +L S   + +  N
Sbjct: 60  LKDKW-SPALQIRTVLLSIQALLSAPN 85


>At5g15080.1 68418.m01767 protein kinase, putative similar to
           protein kinase APK1A [Arabidopsis thaliana]
           Swiss-Prot:Q06548
          Length = 493

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 615 GYASPPPEINGILTSKSVIYNF 680
           GYA+P   + G LTSKS +Y+F
Sbjct: 317 GYAAPEYVMTGHLTSKSDVYSF 338


>At5g07960.1 68418.m00924 expressed protein contains Pfam PF03669:
           Uncharacterised protein family (UPF0139)
          Length = 107

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 465 RPYEAQAFFRELVSPQDFPKDYVGYIKKIM 554
           +P  A+ +    V+P+D P DY G+I  I+
Sbjct: 16  QPSAAKPYIPRPVAPEDLPVDYSGFIAVIL 45


>At3g01300.1 68416.m00039 protein kinase, putative similar to
           protein kinase APK1A [Arabidopsis thaliana]
           Swiss-Prot:Q06548
          Length = 490

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 615 GYASPPPEINGILTSKSVIYNF 680
           GYA+P   + G LTSKS +Y+F
Sbjct: 311 GYAAPEYVMTGHLTSKSDVYSF 332


>At1g69790.1 68414.m08030 protein kinase, putative similar to
           protein kinase APK1A [Arabidopsis thaliana]
           SWISS-PROT:Q06548
          Length = 387

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 612 EGYASPPPEINGILTSKSVIYNF 680
           +GYA+P     G LTSKS +Y+F
Sbjct: 256 QGYAAPEYIATGRLTSKSDVYSF 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,375,316
Number of Sequences: 28952
Number of extensions: 276814
Number of successful extensions: 893
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)