Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I15
         (414 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0825 - 20092781-20092801,20092844-20093079,20093166-200932...    29   1.1  
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898...    27   5.9  
06_03_0939 + 26131405-26131596,26132753-26133166                       27   7.8  

>04_03_0825 -
           20092781-20092801,20092844-20093079,20093166-20093244,
           20093344-20093482,20093533-20093624,20093714-20093830,
           20093930-20094041,20094154-20094260,20094351-20094427,
           20094517-20094598,20094702-20094839,20095495-20095608
          Length = 437

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 210 WLFCLHLLGPIHLLRSLIDNQKAILNAIEFRLCDTVT 320
           WL C+HL  P   L  L+D+  A L AI     D VT
Sbjct: 26  WLTCVHLFMPEMPLMILVDDAGAFLPAINHSPWDGVT 62


>06_01_1095 +
           8984363-8984789,8985175-8985416,8985500-8985622,
           8985783-8985899,8986258-8986399,8986587-8986627,
           8987194-8987453,8987505-8987607,8987698-8987776,
           8987856-8988115
          Length = 597

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 168 SPXCVLCIFRLLTSWLFCLHLLGPIHLLRSL 260
           SP CV  +  LL+++ F +H+L   H+ R++
Sbjct: 261 SPPCVGDLLNLLSAFGFAIHMLRTEHISRNM 291


>06_03_0939 + 26131405-26131596,26132753-26133166
          Length = 201

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 280 IAFWLSISERSKCMGPSRCRQNSQEVSRRNMQS 182
           +A+W ++SER  C   + C    QEV+  + QS
Sbjct: 61  VAWWKAVSERGDCTYGTTCLFVPQEVTGGSPQS 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,118,433
Number of Sequences: 37544
Number of extensions: 74430
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)