Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I15
         (414 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  

>SB_39926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 319 VTVSHNRNSIAFKIAFWLSISERSKCMG 236
           VT+S N   +A   AFWLS++ R KC G
Sbjct: 20  VTLSQN---VAIVTAFWLSVTGREKCGG 44


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 198 LLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIEFRLCDTVTNYIQL 335
           LL  W +C       +LL +L DN+  + + +  + C  +   +QL
Sbjct: 256 LLMGWRYCYSCENAQNLLDALWDNEAPVSHPVFHQACQKLAYQVQL 301


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,413,637
Number of Sequences: 59808
Number of extensions: 92759
Number of successful extensions: 2035
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2035
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)