Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I15
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   2.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   2.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   4.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   4.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   9.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   9.6  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 180 VLCIFRLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIE 296
           ++C+  L+  W  CL  L P  +L+    N    +N ++
Sbjct: 282 LICMMLLIGHWSGCLQFLVP--MLQGFPSNSWVAINELQ 318


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 180 VLCIFRLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIE 296
           ++C+  L+  W  CL  L P  +L+    N    +N ++
Sbjct: 250 LICMMLLIGHWSGCLQFLVP--MLQGFPSNSWVAINELQ 286


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 168 KYTQRQLGRCRQLGTHTPK 112
           +Y Q    RC+ +G H P+
Sbjct: 342 RYRQELQKRCKWMGIHEPE 360


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 168 KYTQRQLGRCRQLGTHTPK 112
           +Y Q    RC+ +G H P+
Sbjct: 342 RYRQELQKRCKWMGIHEPE 360


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 255 SLIDNQKAILNAIEFRLCDTVTNY 326
           +L  N   IL  +  R   TVTNY
Sbjct: 200 TLFGNVLVILAVVRERALQTVTNY 223


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 149 WGGVGNWVLIHQRLCGSKRKNSS 81
           WGG+G  VL    L G+    SS
Sbjct: 563 WGGIGVVVLFAVVLAGATCLGSS 585


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 258 LIDNQKAILNAIEFRLCDTV 317
           +++NQ A+ N     LCD V
Sbjct: 117 IVENQYAVENNTGSSLCDLV 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,971
Number of Sequences: 438
Number of extensions: 793
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)