Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I13
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   156   8e-39
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           151   3e-37
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           148   3e-36
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    39   0.003
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si...    37   0.010
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    31   0.38 
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit...    27   6.2  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  156 bits (379), Expect = 8e-39
 Identities = 71/101 (70%), Positives = 83/101 (82%)
 Frame = +3

Query: 135 KLPVAALEGTYIDKXCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEK 314
           K P  A+EGTYID+ CPFTG VSIRGRIL+G     KMQRTI++RRDYLH++ KY R+EK
Sbjct: 44  KTPREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEK 103

Query: 315 RHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 437
           RH N+  H+SPCFR V+ GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 104 RHSNIPAHVSPCFR-VKEGDRVTIGQCRPLSKTVRFNVLKV 143


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  151 bits (366), Expect = 3e-37
 Identities = 67/101 (66%), Positives = 80/101 (79%)
 Frame = +3

Query: 135 KLPVAALEGTYIDKXCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEK 314
           K P  A++G Y+DK CPFTG VSIRGRIL G     KMQRTI++RRDYLH++ KY R+EK
Sbjct: 44  KTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEK 103

Query: 315 RHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 437
           RH N+  H+SPCFR V+ GD + IG+CRPLSKTVRFNVLKV
Sbjct: 104 RHSNIPAHVSPCFR-VKEGDHIIIGQCRPLSKTVRFNVLKV 143


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  148 bits (358), Expect = 3e-36
 Identities = 67/101 (66%), Positives = 79/101 (78%)
 Frame = +3

Query: 135 KLPVAALEGTYIDKXCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEK 314
           K P  A++G YID  CPFTG VSIRGRIL G     KMQRTI++RR+YLH++ KY R+EK
Sbjct: 44  KTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEK 103

Query: 315 RHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 437
           RH N+  H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 104 RHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 143


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 225 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 401
           G V   KMQ+++V+  D L +   YNR+ KR      H     +D   IGD V +   RP
Sbjct: 6   GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62

Query: 402 LSKTVRFNVLKV 437
           LSK   + V ++
Sbjct: 63  LSKNKHWIVAEI 74


>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GB:Y08858 from
           [Nicotiana plumbaginifolia]
          Length = 105

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = +3

Query: 213 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 392
           + + G V   KMQ ++V+  D L +   YNR+ KR      H         IGD V +  
Sbjct: 2   KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59

Query: 393 CRPLSK 410
            RPLSK
Sbjct: 60  SRPLSK 65


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +3

Query: 213 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 392
           + + G V      +T+ +    L   PKY R  +  +    H  P     ++GD+V + +
Sbjct: 51  KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108

Query: 393 CRPLSKTVRFNVLKV 437
            RP+SKT  F  L V
Sbjct: 109 SRPISKTKSFVALPV 123


>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 210 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 326
           G+++ GVV+    +R + + R   + L   NRF  RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,907,944
Number of Sequences: 28952
Number of extensions: 187633
Number of successful extensions: 394
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)