Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_I12
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 199 3e-52
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 196 3e-51
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 27 2.3
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.3
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 27 2.3
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 3.1
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 4.1
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 5.4
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 7.1
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.1
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 199 bits (485), Expect = 3e-52
Identities = 97/171 (56%), Positives = 126/171 (73%)
Frame = +1
Query: 94 GLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSH 273
G++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS+K A +RT S
Sbjct: 16 GVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGSRKHNACIRTAYSI 74
Query: 274 VENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVN 453
+ NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV
Sbjct: 75 INNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSI 134
Query: 454 SPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 606
S KDE+IIEGNSLE+VS SAA I+Q V+NKDIRKFLDG+YVSE+ +
Sbjct: 135 SSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 196 bits (477), Expect = 3e-51
Identities = 95/171 (55%), Positives = 125/171 (73%)
Frame = +1
Query: 94 GLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSH 273
G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS+K A +R+V S
Sbjct: 16 GVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGSRKHNACIRSVYSI 74
Query: 274 VENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVN 453
+ NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV
Sbjct: 75 INNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSI 134
Query: 454 SPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 606
S KDE+I+EGNSLE+VS SAA I+Q V+NKDIRKFLDG+YVSE+ +
Sbjct: 135 SSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 636 YLMFLYVI*HNSCFLRYIKTIQELSDILILD 544
Y F++ + H S L Y KT++E++ + I+D
Sbjct: 788 YYEFIHSL-HQSSLLPYFKTLKEIAHLFIID 817
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 451 NSPKQKDELIIEGNSLEDVSSSAALIQQS 537
+SPK+K +L ++G L+ + + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = +1
Query: 496 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTT 603
+ D+S+SA + T + N+++ K +GL+++ +T+
Sbjct: 78 MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 163 FKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 300
F H +VD+ + L + E WF + T+CS + N++ VT
Sbjct: 1594 FTHGSVDMLIEQNNLKQSEIWFVLNDFSLVLATICSCLGNLLNLVT 1639
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -2
Query: 264 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 118
D P+G GS F+ V+H+N N+ ++ +N N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/63 (22%), Positives = 35/63 (55%)
Frame = +1
Query: 115 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKG 294
S+L + + ++ RN + L++ ++VN +E W G + +AV T + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169
Query: 295 VTK 303
++K
Sbjct: 1170 LSK 1172
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 258 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 136
PH GK S +N E+R A+V+S + PF GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 248 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 138
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,865
Number of Sequences: 5004
Number of extensions: 54284
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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