Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I12
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   223   7e-59
09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    222   2e-58
03_06_0712 - 35683814-35684065,35685296-35685466                       27   9.7  

>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  223 bits (546), Expect = 7e-59
 Identities = 105/177 (59%), Positives = 137/177 (77%), Gaps = 3/177 (1%)
 Frame = +1

Query: 94  GLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELAAVRTV 264
           G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +AA+RT 
Sbjct: 6   GVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMAAIRTA 65

Query: 265 CSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVT 444
            SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT
Sbjct: 66  ISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVT 125

Query: 445 VVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 615
           ++ S K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 126 ILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 182


>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  222 bits (542), Expect = 2e-58
 Identities = 104/175 (59%), Positives = 136/175 (77%), Gaps = 1/175 (0%)
 Frame = +1

Query: 94  GLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWFGSKKELAAVRTVCS 270
           G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WFG+++ +AA+RT  S
Sbjct: 15  GVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAIS 74

Query: 271 HVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVV 450
           HV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++
Sbjct: 75  HVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTIL 134

Query: 451 NSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 615
            S K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 135 RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 189


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 148 VLKRNF-KHLAVDIRMVNPRLLKVE 219
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,920,950
Number of Sequences: 37544
Number of extensions: 340368
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)