Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_I12
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 203 9e-53
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 201 3e-52
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 201 3e-52
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim... 32 0.29
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi... 28 6.1
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /... 28 6.1
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa... 27 8.1
At4g03640.1 68417.m00499 hypothetical protein includes At2g05890... 27 8.1
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 203 bits (495), Expect = 9e-53
Identities = 96/180 (53%), Positives = 129/180 (71%), Gaps = 5/180 (2%)
Frame = +1
Query: 94 GLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVR 258
G+ + V ++++ V+GPRG L R+FKHL +D +++ R LK++ WFGS+K A++R
Sbjct: 15 GVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSRKTSASIR 74
Query: 259 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPG 438
T SHV+N+I GVT+GF Y+MR VYAHFPIN N IEIRNFLGEK +R+V+M G
Sbjct: 75 TALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDG 134
Query: 439 VTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 618
V +V S K KDE+I+EGN +E VS S ALI Q VK KDIRKFLDG+YVSEK + +++
Sbjct: 135 VKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 201 bits (491), Expect = 3e-52
Identities = 94/179 (52%), Positives = 131/179 (73%), Gaps = 5/179 (2%)
Frame = +1
Query: 97 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRT 261
+T+ V ++++ V+GPRG L R+FKHL +D +++ + LK++ WFG++K A++RT
Sbjct: 16 VTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRT 75
Query: 262 VCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGV 441
SHV+N+I GVT+GF+YKMR VYAHFPIN IEIRNFLGEK +R+V+M GV
Sbjct: 76 ALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGV 135
Query: 442 TVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 618
T+V S K KDE++++GN +E VS S ALI Q VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 136 TIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 201 bits (491), Expect = 3e-52
Identities = 94/179 (52%), Positives = 131/179 (73%), Gaps = 5/179 (2%)
Frame = +1
Query: 97 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRT 261
+T+ V ++++ V+GPRG L R+FKHL +D +++ + LK++ WFG++K A++RT
Sbjct: 16 VTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRT 75
Query: 262 VCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGV 441
SHV+N+I GVT+GF+YKMR VYAHFPIN IEIRNFLGEK +R+V+M GV
Sbjct: 76 ALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGV 135
Query: 442 TVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 618
T+V S K KDE++++GN +E VS S ALI Q VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 136 TIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194
>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
Similar to Mycobacterium RlpF (gb|Z84395). ESTs
gb|T75785,gb|R30580,gb|T04698 come from this gene
Length = 223
Score = 32.3 bits (70), Expect = 0.29
Identities = 29/146 (19%), Positives = 65/146 (44%)
Frame = +1
Query: 97 LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHV 276
+T+ ++ + + VKGP G L + V++ L+V+K +++ +
Sbjct: 57 VTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRANQMHGLFRTLT 115
Query: 277 ENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNS 456
+NM+ GV+KGF+ K+ V + T +G ++ L + VKM ++
Sbjct: 116 DNMVVGVSKGFEKKLILVGVGYR---ATVDGKELV-----LNLGFSHPVKMQIPDSLKVK 167
Query: 457 PKQKDELIIEGNSLEDVSSSAALIQQ 534
++ + + G ++ AA +++
Sbjct: 168 VEENTRITVSGYDKSEIGQFAATVRK 193
>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
to CLC-d chloride channel protein [Arabidopsis thaliana]
GI:1742959
Length = 792
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +1
Query: 343 PINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 522
P V E S+ ++ N + +R + + P + V + +L+IE N SSA
Sbjct: 706 PSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENG----ESSAV 761
Query: 523 LIQQSTTVKNK 555
+QQST+V+ +
Sbjct: 762 ELQQSTSVRGR 772
>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
cytokinin oxidase family protein similar to cytokinin
oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
Length = 501
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = -3
Query: 488 PSMISS-SFCFGELTTVTPGAI 426
PS+IS+ S FG +TTVTPG +
Sbjct: 39 PSIISAASHDFGNITTVTPGGV 60
>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1107
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 400 GEKYIRRVKMAPGVTVVNSPKQKDELI-IEGNSLEDVSSS---AALIQQSTTVKNKDIRK 567
G+K +++A + SP+ K +L+ I+G + EDVS S L + T + KD+
Sbjct: 637 GDKQNTAIQIALSCNFI-SPEPKGQLLMIDGKTEEDVSRSLERVLLTMRITASEPKDVAF 695
Query: 568 FLDG 579
+DG
Sbjct: 696 VIDG 699
>At4g03640.1 68417.m00499 hypothetical protein includes At2g05890,
At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
At1g39430, At2g10460, At4g03640, At5g35250
Length = 394
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 131 TVTRRDFTWTVSPXWDFDFXICYNLLHVWALFDTRAGKS 15
T T TW +SP + + I LLHVW + +AG+S
Sbjct: 29 TWTTLSRTW-LSPPYKNAWRIQVKLLHVWRQYFVKAGES 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,928,814
Number of Sequences: 28952
Number of extensions: 282330
Number of successful extensions: 673
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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