Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I11
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4 |Schiz...   100   3e-22
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    28   1.9  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   2.5  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    27   4.4  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    27   4.4  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   7.7  

>SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score =  100 bits (239), Expect = 3e-22
 Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 9/166 (5%)
 Frame = +1

Query: 373 FFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGVRAAPLWDSNQQQFVGMLTITDF 552
           F +    YD++PTS +L+VFD  L VK +   L  N + +APLWDS   +F G+LT+ DF
Sbjct: 18  FIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADF 77

Query: 553 IKILQMYYTSPDV--KMEELEEHRLETWRRVLK--GSVMP-LVSIGPDSSLFEAIRMLIT 717
           + +++ YY S      + E+++ RL   R V +  G++ P  + + P  SL +A   +  
Sbjct: 78  VNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSK 137

Query: 718 NRIHRLPVIDPD--TGN--VLYILTHKRILXFLFLVYKRITKAVVP 843
           +R  R+P+ID D  TG+  ++ +LT  RIL F+ +  K      VP
Sbjct: 138 SRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVP 183


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 499  LWDSNQQQFVGMLTITDFIKILQMYYTSPDVKMEELEEHRLETWRRVLKGSVMP--LVSI 672
            LW  N   F+  L I D+  I+ + YT  ++ +  ++  R  TW + L+  V    LV  
Sbjct: 1835 LW--NDTLFLSKLNIMDYSLIVGIDYTKKELYVGIIDFIRTYTWDKKLESWVKEKGLVGR 1892

Query: 673  GPDSSL 690
            GP+ ++
Sbjct: 1893 GPEPTI 1898


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 224 TDTELQMHSWILIMLPFSSAIPEGFPSLTRSWRKLAFLI*RKMSRKY 364
           T TE Q+H W L+   +SSA    + SL  +++ L  ++ R  S  +
Sbjct: 723 TSTEFQIHLWYLLYQAYSSA-HRPYNSLLCAFQSLKIILIRLCSSSF 768


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 380 LKNLTNICDSSSSKSE-RLTFSRN 312
           LKNL  +C SSS K   RL+FS+N
Sbjct: 480 LKNLQGVCLSSSIKGGIRLSFSKN 503


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 7/137 (5%)
 Frame = +1

Query: 247 FLDPHHAAILFRDSRGLPVADPFLEK-----VSLSDLEEDESQIFVKFFKFHKCYDLIPT 411
           +L  ++  ++F   + L  A P ++K     VS+S +   ES  + K         L   
Sbjct: 212 YLSMYYEVVIFT-RQYLATAKPIIDKIDPYHVSISAVLTRESSKYEKGKVIKDLSYLNRD 270

Query: 412 SAKLVVFDTQLLVKKAFFALVYNGVRAAPLWDSN--QQQFVGMLTITDFIKILQMYYTSP 585
            +++++ DT     +++     N +  AP W  N   ++ VG++ + +FI I+ +    P
Sbjct: 271 LSRVIMIDTN---PESWSKQPDNAIAMAP-WTGNPKDKELVGLIPLLEFIAIMDIKDVRP 326

Query: 586 DVKMEELEEHRLETWRR 636
            +K  + +   LE  RR
Sbjct: 327 VLKSYQGKNIPLEYARR 343


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
 Frame = +2

Query: 95  IYLRFEISEISRVQSIIQ*EHIYAGLPRNKLKNAGRLSATCLLTDTE---LQMHSWILIM 265
           +Y R +I  +  + S +  +H+   L RN L + G L + C++  T    +   + ++ M
Sbjct: 720 VYSRSDIYLLDDILSAVD-QHVNRDLVRNLLGSKGLLRSRCVILSTNSLTVLKEASMIYM 778

Query: 266 LPFSSAIPEG-FPSLTRSWRKLAFLI*RKMSRK 361
           L     I  G F  L+ S     F +  + S+K
Sbjct: 779 LRNGKIIESGSFTQLSSSPDSQLFQLLSEFSKK 811


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,524,216
Number of Sequences: 5004
Number of extensions: 73787
Number of successful extensions: 242
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)