Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_I11
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0807 - 19860041-19860132,19860248-19860347,19861101-198611... 74 1e-13
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124... 73 3e-13
04_01_0202 - 2414640-2414746,2414866-2414937,2415041-2415110,241... 35 0.094
04_03_0691 - 18756812-18756883,18757453-18757590,18758017-187583... 34 0.12
04_03_0439 + 15937934-15938167,15938276-15938476,15938852-159389... 34 0.12
02_05_1232 + 35110891-35111154,35111272-35111448,35111557-351116... 33 0.22
01_05_0510 - 22816607-22816916,22817005-22817177,22817341-228176... 33 0.22
03_05_1057 - 30005946-30006088,30006183-30006243,30006493-300065... 31 1.5
02_01_0443 + 3204142-3204674,3205446-3206178 31 1.5
05_01_0515 + 4343067-4344206,4344293-4344478,4344884-4345018,434... 30 2.0
08_01_0001 - 14186-14288,14473-14590,14671-14727,14943-15010,151... 29 4.7
01_06_0968 + 33466574-33466607,33467087-33467115,33467438-334675... 29 4.7
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491... 28 8.1
>04_03_0807 -
19860041-19860132,19860248-19860347,19861101-19861170,
19861344-19861407,19862531-19862704,19862805-19862946,
19863413-19863544,19863616-19863705,19864093-19864152,
19864227-19864343,19864441-19864611,19866909-19866984,
19867156-19867223
Length = 451
Score = 74.1 bits (174), Expect = 1e-13
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Frame = +1
Query: 394 YDLIPTSAKLVVFDTQLLVKKAFFALVYNGVRAAPLWDSNQQQFVGMLTITDFIKIL-QM 570
YD++P S+K+ V D +L VK+AF + G+ PLWD QQ GMLT +DF+ IL ++
Sbjct: 136 YDVVPVSSKIAVLDARLPVKQAFKIMHDEGLSLVPLWDDQQQTVTGMLTASDFVLILRKL 195
Query: 571 YYTSPDVKMEELEEHRLETWRR----------VLKGSVMPLVSIGPDSSLFEAIRMLITN 720
+ EELE H + W+ V PL+ + +L + +I N
Sbjct: 196 QRNIRTLGHEELEMHSVSAWKEAKLQFYGGPDVAAIQRRPLIHVKDSDNLRDVALAIIRN 255
Query: 721 RIHRLPVIDPDT 756
I +P+ P T
Sbjct: 256 EISSVPIFKPST 267
>03_06_0744 +
35910512-35910569,35911145-35911325,35912332-35912419,
35912541-35912726,35913591-35913725,35913803-35913862,
35914609-35914698,35915384-35915515,35916039-35916183,
35916266-35916439,35916629-35916692,35916778-35916847,
35917328-35917445,35918258-35918280,35918398-35918499,
35919831-35920250,35920327-35920563
Length = 760
Score = 72.9 bits (171), Expect = 3e-13
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 24/170 (14%)
Frame = +1
Query: 307 DPFLEKVSLSD--LEEDESQIFVKFFKFHKC-----------YDLIPTSAKLVVFDTQLL 447
D F VSLSD ++E +I + +C YDL+P S K++ D L
Sbjct: 166 DNFQRTVSLSDGIIQEGPQRISEAAIQISRCRVADFLNGQTGYDLLPDSGKVIALDVNLP 225
Query: 448 VKKAFFALVYNGVRAAPLWDSNQQQFVGMLTITDFIKILQMYYT-SPDVKMEELEEHRLE 624
VK++F L G+ APLWDS + QFVG+L+ DFI IL+ T ++ E+LE H +
Sbjct: 226 VKQSFHILHEQGIPVAPLWDSFRGQFVGLLSPLDFILILRELETHGSNLTEEQLETHTIS 285
Query: 625 TWRRVLK-------GSVMP---LVSIGPDSSLFEAIRMLITNRIHRLPVI 744
W+ + GS LV P SL E ++ N + +P++
Sbjct: 286 AWKEAKRQTYARNEGSWRANHHLVHATPYESLREIAMKILQNGVSTVPIM 335
>04_01_0202 -
2414640-2414746,2414866-2414937,2415041-2415110,
2415992-2416174,2416254-2416538
Length = 238
Score = 34.7 bits (76), Expect = 0.094
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 646 GSVM--PLVSIGPDSSLFEAIRMLITNRIHRLPVIDPDTGNVLYILT 780
G VM P +++ P+ ++ EA +++ ++HR+PV++ + YI T
Sbjct: 162 GEVMSSPAITLTPEKTVLEAAALMLKEKVHRIPVVNEQQQVIDYIST 208
>04_03_0691 -
18756812-18756883,18757453-18757590,18758017-18758308,
18758485-18758648,18759159-18759434,18759512-18759718,
18760303-18760475,18761978-18762139,18762561-18762720
Length = 547
Score = 34.3 bits (75), Expect = 0.12
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Frame = +1
Query: 418 KLVVFDTQLLVKKAFFALVYNGVRAAPLWDSNQQQFVGMLTITDFIKIL---QMY--YTS 582
KLV + V KAF + GV P+ D++ + +G ++I D +L +Y Y +
Sbjct: 323 KLVKVNEDQPVLKAFQLMREKGVGGLPVMDTSGTKAIGNISIRDVQYLLTAPNIYKDYRT 382
Query: 583 PDVK--MEELEEHRLETWR-RVLKGSVMPLVSIGPDSSLFEAIRMLITNRIHRLPVIDPD 753
K + + +H E L GSV ++ D + + I L + +IHR+ VID D
Sbjct: 383 ITAKDFLTAVRQHLQEQHEASPLLGSV---ITCRRDDEVKDIILKLDSEKIHRIYVID-D 438
Query: 754 TGNVLYILTHKRIL 795
GN ++T + I+
Sbjct: 439 KGNTEGVITLRDII 452
>04_03_0439 +
15937934-15938167,15938276-15938476,15938852-15938911,
15939896-15939958,15940822-15940848,15941020-15941358
Length = 307
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = -1
Query: 639 HAAPRLEAVFLELFHFDVGARVVHL*YLDEVRYSQHTNELLLVRVPQRG 493
+ P+ EA + L H V A V HL D Y HTNELLL + Q G
Sbjct: 37 YGPPKPEADMVALIHHAVAAGVTHLDTSD--MYGPHTNELLLGKALQGG 83
>02_05_1232 +
35110891-35111154,35111272-35111448,35111557-35111626,
35111717-35111788,35111921-35111976
Length = 212
Score = 33.5 bits (73), Expect = 0.22
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = +1
Query: 658 PLVSIGPDSSLFEAIRMLITNRIHRLPVIDPDTGNVLYILTHKRIL 795
P +++ D ++ +A +++ +IHRLP+++ D V+ I+T +L
Sbjct: 159 PAITLPSDKTVMDAAALMLKKKIHRLPIVNQDR-QVIGIVTRADVL 203
>01_05_0510 -
22816607-22816916,22817005-22817177,22817341-22817607,
22817951-22818393,22818474-22818635,22820991-22821414,
22823177-22823227
Length = 609
Score = 33.5 bits (73), Expect = 0.22
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Frame = +1
Query: 445 LVKKAFFALVYNGVRAAPLWDSNQQQFVGMLTITDFIKIL---QMYYTSPDVKMEELEEH 615
L+ +AF + N + P+ + ++ VG ++I D +L ++ + + E +
Sbjct: 458 LILEAFKCMKDNKIGGVPVVEGPNKKLVGSVSIRDIRFLLLRPDLFSNFRQLTVMEFMKT 517
Query: 616 RLETWRRVLKGSVMPLVSIGPDSSLFEAIRMLITNRIHRLPVIDPDTGNVLYILTHKRIL 795
T G V P ++ PD+SL I + + HR+ V+D D V + I
Sbjct: 518 IGSTVSDSGNGLVKPPLTCSPDASLGSVIDSIASRITHRIYVVDGDFEVVGVVTLRDVIS 577
Query: 796 XFLF 807
F++
Sbjct: 578 CFIY 581
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 661 LVSIGPDSSLFEAIRMLITNRIHRLPVIDPDTG 759
++ I D+S+ +A+R+L + I PV++P+ G
Sbjct: 213 VIEIPGDTSVLDAVRILSKHNIRAAPVLNPECG 245
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 658 PLVSIGPDSSLFEAIRMLITNRIHRLPVIDPDTGNVLYILTHKRIL 795
P V I D+S+ + +L R+ +PVI+PD + +T ++
Sbjct: 372 PFVPITLDTSMLTVLLLLSKYRLRNVPVIEPDKPIIKNFITQTGVV 417
>03_05_1057 -
30005946-30006088,30006183-30006243,30006493-30006566,
30006939-30007020,30007097-30007355,30007633-30007682,
30008243-30008275
Length = 233
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 661 LVSIGPDSSLFEAIRMLITNRIHRLPVIDPDTGNV 765
L+++ PD+ + +A++++ RI +PVID TG V
Sbjct: 169 LITVKPDTRVLQAMQLMTEKRIRHIPVID-GTGMV 202
>02_01_0443 + 3204142-3204674,3205446-3206178
Length = 421
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 661 LVSIGPDSSLFEAIRMLITNRIHRLPVIDPD 753
+V+ P+S+L EAI + + +HRL V+D +
Sbjct: 359 MVTCSPESTLGEAIEKAVAHHVHRLWVVDEE 389
>05_01_0515 +
4343067-4344206,4344293-4344478,4344884-4345018,
4346652-4346753,4346973-4347068,4347146-4347238,
4347351-4347470,4347580-4347612,4347699-4347749,
4347874-4347952,4348398-4348456
Length = 697
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 519 AVRWYAD-----YNGLHQDTTDVLHEPRRQNGRARGTPPRDVAPRVERFSDAARIDR 674
++ WY D Y+G VLH+ RR +G+A AP V +A R+++
Sbjct: 416 SLEWYFDLEWCKYSGFQDYQRLVLHDNRRYSGKAVAEVKASTAPYVSSALEAKRVEK 472
>08_01_0001 -
14186-14288,14473-14590,14671-14727,14943-15010,
15104-15144,15405-15461,15980-16041,16833-16929,
17016-17102,17171-17263,17394-17452,17653-17716
Length = 301
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +1
Query: 409 TSAKLVVFDTQLLVKKAFFALVYNGVRAAPLWDSNQQQFVGMLTITDFIKILQMYYTSPD 588
T L F T L++ +FF L Y+ V A N F G L + ++ + PD
Sbjct: 36 TLGMLQGFATGLMLSMSFFDLAYDAVNAIGFLKGNLWFFAGALLFSTIAEV----FPEPD 91
Query: 589 VKMEELEEHRLE 624
+ + + LE
Sbjct: 92 CNLADENDKHLE 103
>01_06_0968 +
33466574-33466607,33467087-33467115,33467438-33467595,
33468319-33468436,33468520-33468708,33469008-33469343,
33469468-33469569,33469696-33469890,33469993-33470155,
33470314-33470579,33470670-33470765,33470860-33471255,
33471403-33471501
Length = 726
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 358 QIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFF---ALVYNGVRAAPLWDSNQQQFV 528
QI VK + Y SA ++ DT LVKK + +Y G + P D NQ+
Sbjct: 651 QIPVKLASGDRMYSRSAASAIRLMTDTIALVKKTLMNEHSGIYGGEKGGPCADKNQEHAK 710
Query: 529 GM 534
G+
Sbjct: 711 GI 712
>02_05_0967 -
33148283-33148524,33148602-33148881,33148959-33149151,
33149244-33149324,33149395-33149520,33149758-33150137,
33150367-33150394,33150816-33150979,33151920-33152039,
33152168-33152416
Length = 620
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 435 HATPGQEGFLRPCLQWRASRPAVGLEPAAVRWYADYNGLHQDTTDVLHE-PRRQNGRARG 611
H PG LR R + + GL+PA + +D +D +H+ RR+ G
Sbjct: 5 HHKPGLRVRLRITAARRRAWLSAGLQPACRK------PPRRDPSDSVHKVARREIGGGHR 58
Query: 612 TPPRDVAPRVERFS 653
PPR AP FS
Sbjct: 59 RPPRPAAPSSSAFS 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,861,460
Number of Sequences: 37544
Number of extensions: 518520
Number of successful extensions: 1593
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -