Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_I11
(846 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59284| Best HMM Match : CBS (HMM E-Value=1.2e-15) 78 1e-14
SB_38598| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-07) 34 0.13
SB_23380| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.17
SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.67
SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011) 31 1.6
SB_42266| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15) 30 2.7
SB_10883| Best HMM Match : ig (HMM E-Value=7.00649e-43) 29 4.7
SB_8401| Best HMM Match : ig (HMM E-Value=8.1e-22) 29 4.7
SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23) 29 4.7
SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2) 28 8.3
>SB_59284| Best HMM Match : CBS (HMM E-Value=1.2e-15)
Length = 397
Score = 77.8 bits (183), Expect = 1e-14
Identities = 35/49 (71%), Positives = 40/49 (81%)
Frame = +1
Query: 661 LVSIGPDSSLFEAIRMLITNRIHRLPVIDPDTGNVLYILTHKRILXFLF 807
LV I P SL+EA+RML+ +IHRLPVIDP TGN LYI+THKRIL FLF
Sbjct: 249 LVRISPTQSLYEAVRMLLEFKIHRLPVIDPSTGNALYIITHKRILKFLF 297
Score = 36.7 bits (81), Expect = 0.024
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Frame = +1
Query: 337 DLEED---ESQIFVKFFKFHKCYDLIPTSAKLVVFDTQL 444
D+EE E+ + F K C++L+P S+K+VVFDT+L
Sbjct: 164 DIEESMMGENWCYSNFLKSRMCHELMPKSSKIVVFDTKL 202
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 679 DSSLFEAIRMLITNRIHRLPVIDPDTGNVLYILTHKRILXFLFL 810
+ +LF + LI R+HRL V+D + + + +L+ IL FL L
Sbjct: 351 EETLFLIVERLIEARVHRLVVVDKE-DHCIGVLSLSDILRFLIL 393
>SB_38598| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-07)
Length = 336
Score = 34.3 bits (75), Expect = 0.13
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 80 SKYVNIYLRFEISEISRV-QSIIQ*EHIYAGLPRNKLKNAGRLSATCLLTDTELQMHSWI 256
S ++Y F+I +ISR Q I +HI GLPRN+LK + + ++T L + I
Sbjct: 189 SVLTSVYCSFKIMQISRRHQRQIAADHITTGLPRNRLKLSSVRALFIIVTTLRLFTYGLI 248
Query: 257 LI 262
+
Sbjct: 249 FV 250
>SB_23380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 33.9 bits (74), Expect = 0.17
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +1
Query: 436 TQLLVKKAFFALVYNGVRAAPLWDSNQQQFVGMLTITDFIKILQMYYTSPDVKMEELEEH 615
T LLV + + Y+G L DS Q + GM+ F+ LQ Y +P++ H
Sbjct: 326 TGLLVFLCLYVVKYSGTILIELIDSIQAKLFGMIVEKCFVPDLQKVYHAPNIHKIVDCTH 385
Query: 616 RLETW 630
R+ W
Sbjct: 386 RVADW 390
>SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 31.9 bits (69), Expect = 0.67
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +1
Query: 418 KLVVFDTQLLVKKAFFALVYN-GVRAAPLWDSNQQQFVGMLTITDFIKILQMYYTSPDVK 594
K +V +L A +V+ + +P W ++ VGM+ + F IL+ T +
Sbjct: 151 KKIVMSEELCDYLAKLNIVWKLNLSRSPWWGGQFERLVGMMKQSLFKVILRYSGTPGGTR 210
Query: 595 MEELEEHRLETWRRVLKGSVMPLVSIGPDS 684
M + E +E + L+G + L IG S
Sbjct: 211 MAKTTEASIENMEQTLEGKLKSLRFIGTQS 240
>SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)
Length = 782
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 576 VVHL*YLDEVRYSQHTNELLLVRVPQRGGSHAIVNKGEES 457
+ HL YL ++ HT++L L+++ R G+ A GE +
Sbjct: 97 ITHLYYLHSLKAYSHTSQLHLMKIAARAGARAGAYAGESA 136
>SB_42266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 532 MLTITDFIKILQMYYTSPDVKMEELEEHR 618
M+T+ +FIK+L + PDV+ +++EE R
Sbjct: 283 MVTLEEFIKLLGEHVGVPDVQFDKVEERR 311
>SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)
Length = 794
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/83 (26%), Positives = 32/83 (38%)
Frame = +3
Query: 483 RASRPAVGLEPAAVRWYADYNGLHQDTTDVLHEPRRQNGRARGTPPRDVAPRVERFSDAA 662
+ +RPA P Y D N + + L P + G P R P+V + + +
Sbjct: 553 QVARPASDPTPVREPCY-DMNTMPEHFQQTLSMPSLERVNGMGLPRRGSLPQVGSYPEGS 611
Query: 663 RIDRS*FFTVRSHKDVDHEPHPS 731
V SH H+PHPS
Sbjct: 612 FPSLP---PVSSHSMFQHQPHPS 631
>SB_10883| Best HMM Match : ig (HMM E-Value=7.00649e-43)
Length = 1280
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 697 LRTVKNQDRSIRAASLNLSTRGATSRG 617
L+T+K Q + + ASLNL TR AT G
Sbjct: 134 LQTIKQQSENAQYASLNLGTRIATMPG 160
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 697 LRTVKNQDRSIRAASLNLSTRGATSRG 617
L+T+K Q + + ASLNL TR AT G
Sbjct: 819 LQTIKQQSENAQYASLNLGTRIATMPG 845
>SB_8401| Best HMM Match : ig (HMM E-Value=8.1e-22)
Length = 965
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 697 LRTVKNQDRSIRAASLNLSTRGATSRG 617
L+T+K Q + + ASLNL TR AT G
Sbjct: 548 LQTIKQQSENAQYASLNLGTRIATMPG 574
>SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)
Length = 960
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 697 LRTVKNQDRSIRAASLNLSTRGATSRG 617
L+T+K Q + + ASLNL TR AT G
Sbjct: 890 LQTIKQQSENAQYASLNLGTRIATMPG 916
>SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 861
Score = 28.3 bits (60), Expect = 8.3
Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 4/150 (2%)
Frame = +1
Query: 169 AASQQAEKRRSSLGNVPVNRHRASDAFLDPHHAAILFRDSRGLPV-ADPFLEKVSLSDLE 345
A S QA + R+ L N P N + L + I + + + ++ F ++ D
Sbjct: 193 ADSSQAAQDRAGLMNAPRNSAKLLQEKLSHYLDIIEMNLAYQISLRSEDFFSAMASQDQL 252
Query: 346 EDESQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAF---FALVYNGVRAAPLWDSNQ 516
+D +K K H + S L D LL K++ + VY+ ++ Q
Sbjct: 253 QDHVGQTIKEIK-HLRMKIHKVSEVLCHGDLNLLRKQSLRSKYLSVYDKLKLMATVHQTQ 311
Query: 517 QQFVGMLTITDFIKILQMYYTSPDVKMEEL 606
+L+ +DF+ L + T+ +V +EL
Sbjct: 312 PTIQLLLSTSDFVGALDLISTTQEVLQQEL 341
>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +1
Query: 616 RLETWRRVLKGSVMPLVSIGPDSSLFEAIRMLITNRIHRLPVIDPDT 756
R E RRVL S + +VS GP S+F T+ HR P + P T
Sbjct: 1653 RFEIERRVLSRSSVNVVSYGPVVSVFNG-----TDLQHRDPTVSPYT 1694
>SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2)
Length = 835
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = +3
Query: 612 TPPRDVAPRVERFSDAARIDRS*FFTVRSHKDVDHEPHPSSTGHRSRHRQRALHTDAQED 791
TPP+ P + + I S T HK P P S+ R+ L + Q D
Sbjct: 551 TPPKKAVPSRGHQTPKSNITPSSISTSEEHKIAGKPPRPKSSKRRTSKPTTHLPSSKQHD 610
Query: 792 T 794
T
Sbjct: 611 T 611
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,288,465
Number of Sequences: 59808
Number of extensions: 585680
Number of successful extensions: 1660
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1660
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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