Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_I11
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.38 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 384 SQVLRS-DTNLGEAGRVRHATPGQEGFLRPCLQWRASRPAVGLEPAAVRWYADYNGLHQD 560
           SQ+L+S ++ L  A +     P Q    +  +QWR  +PA+  E   +R+  + N L  +
Sbjct: 6   SQLLKSRESLLSNAYKQGFCQPTQRTMSK--IQWRKPKPAMVEEKTQLRYLEELNALRTE 63


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 478 NGVRAAPLWDSNQQQFVGMLTITDFIKILQMYYTS 582
           NG   A L  SN++Q V +    +  K L M+Y +
Sbjct: 499 NGSLYAILNFSNEEQIVDLKAFNNVPKKLNMFYNN 533


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = -1

Query: 519 LLVRVPQRGGSHAIVNKGEESLLDQELRVEHDQLRRGWYQIVALVKLEELDEYLRLIFL* 340
           L++R+ +  GS A + K  E+       VE    ++   Q   LVK++   +YL  +   
Sbjct: 90  LVLRLREGIGSLARILKTIENFKGTVTHVESRPSKKEGLQFDVLVKVDMTRQYLLQLIRN 149

Query: 339 IRKANFL 319
           +R+++ L
Sbjct: 150 LRQSSAL 156


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 478 NGVRAAPLWDSNQQQFVGMLTITDFIKILQMYYTS 582
           NG   A L  SN++Q V +    +  K L M+Y +
Sbjct: 499 NGSLYAILNFSNEEQIVDLKAFNNVPKKLNMFYNN 533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,983
Number of Sequences: 438
Number of extensions: 4925
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)